Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000169108 |
Family | GH28 |
Protein Properties | Length: 307 Molecular Weight: 32804 Isoelectric Point: 6.8244 |
Chromosome | Chromosome/Scaffold: 002815384 Start: 2837 End: 4327 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 4 | 286 | 0 |
TWVGFKHVDMITVSGGESFDGQGAFAWSQNNCSKSKHCSGSANLRFDFVTNSTIQDVTSLNNKNFHVHVYGCNNVTFQHVHVTAPGDNKNIDGIHIGKST GINITHTYIGTGDDCVSIGDGNNQIAVTNVTCGPGHGISIGSLGRYDNEESLAGIIVKNYTLTNTQNGVRIKTWPNSPMATAASDIHFEDIIMVNTRLPF NNPIVIDQLYCPYKKCDNLPPSEVKINDVIFKNIKGSSATALSLKIVCSSGSPCENVELADVVLTYSGAKGTLTSQCSNVKPT |
Full Sequence |
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Protein Sequence Length: 307 Download |
MEGTWVGFKH VDMITVSGGE SFDGQGAFAW SQNNCSKSKH CSGSANLRFD FVTNSTIQDV 60 TSLNNKNFHV HVYGCNNVTF QHVHVTAPGD NKNIDGIHIG KSTGINITHT YIGTGDDCVS 120 IGDGNNQIAV TNVTCGPGHG ISIGSLGRYD NEESLAGIIV KNYTLTNTQN GVRIKTWPNS 180 PMATAASDIH FEDIIMVNTR LPFNNPIVID QLYCPYKKCD NLPPSEVKIN DVIFKNIKGS 240 SATALSLKIV CSSGSPCENV ELADVVLTYS GAKGTLTSQC SNVKPTISGL TRALTCATSS 300 VMLPPLI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-52 | 5 | 281 | 291 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-59 | 3 | 296 | 297 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-59 | 5 | 300 | 300 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-89 | 5 | 288 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-101 | 3 | 289 | 288 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR26683.1 | 0 | 5 | 300 | 114 | 405 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89476.1 | 0 | 3 | 296 | 104 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 5 | 296 | 106 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 3 | 296 | 104 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 3 | 296 | 104 | 393 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 6e-19 | 12 | 282 | 95 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-19 | 12 | 282 | 95 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 3e-17 | 2 | 289 | 59 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-17 | 2 | 289 | 59 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-17 | 2 | 289 | 59 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR463354 | 277 | 22 | 297 | 0 |
GR462194 | 278 | 4 | 280 | 0 |
EH772281 | 286 | 5 | 287 | 0 |
EC944002 | 254 | 10 | 262 | 0 |
GW611463 | 238 | 21 | 257 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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