Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000174216 |
Family | GH28 |
Protein Properties | Length: 501 Molecular Weight: 54232.2 Isoelectric Point: 5.3328 |
Chromosome | Chromosome/Scaffold: 005665202 Start: 9516 End: 12508 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 119 | 464 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEAGAIILGSQDYTHWETVEPLPSYGRGIDLPGWRYRSLINGDNLTDVMVTGDNGTIDGQGSVWWEQFSYHA LNYSRPHLVEFTGCENVTVSNLTLLNSPAWHIHPTYCSNVQVLNITLHAFHASPYTSGIVPDSSENVCIENCNISVGHDAIVLKSGWDEYGIAFGKPTKN VHIRGVNIQSSLGSGLAFGSEMSGGISNVRAEQLHLHDSFIGIALKTAMGRGGYMKDIVISNVEMENIHLAIEATGQIGSHPDEKYDPDELPVVKGITFE NMVGTNITLVGNFSGLKKSPFTSICLSNISFSLTWNSSTSWFCSNV |
Full Sequence |
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Protein Sequence Length: 501 Download |
MVPPPPPPCA VHPTSESLPS SNLACHCNDS WRVLGAKIVS ARQDFVLGIV ELALLLILAF 60 TSAAQYDGEG KDGECEGNKL FDPRPHSVSL LEFGAVGDGK TLNTVAFQNA IFYVKSFADK 120 GGAQLYVPPG RWLTGSFNLT SHLTLFLEAG AIILGSQDYT HWETVEPLPS YGRGIDLPGW 180 RYRSLINGDN LTDVMVTGDN GTIDGQGSVW WEQFSYHALN YSRPHLVEFT GCENVTVSNL 240 TLLNSPAWHI HPTYCSNVQV LNITLHAFHA SPYTSGIVPD SSENVCIENC NISVGHDAIV 300 LKSGWDEYGI AFGKPTKNVH IRGVNIQSSL GSGLAFGSEM SGGISNVRAE QLHLHDSFIG 360 IALKTAMGRG GYMKDIVISN VEMENIHLAI EATGQIGSHP DEKYDPDELP VVKGITFENM 420 VGTNITLVGN FSGLKKSPFT SICLSNISFS LTWNSSTSWF CSNVIGFSQE VSPKPCPNLQ 480 VSAFNSSAAC FFPLYNYASV L |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-21 | 84 | 476 | 421 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-24 | 85 | 448 | 383 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-27 | 86 | 487 | 420 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-28 | 186 | 476 | 307 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-58 | 88 | 386 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 61 | 477 | 12 | 428 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36899.1 | 0 | 63 | 501 | 37 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269037.1 | 0 | 61 | 501 | 100 | 542 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 61 | 477 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 63 | 485 | 14 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-39 | 86 | 446 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-39 | 86 | 446 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-39 | 86 | 446 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-39 | 86 | 446 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-17 | 132 | 464 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797483 | 415 | 78 | 492 | 0 |
HO797919 | 393 | 70 | 460 | 0 |
DW140556 | 292 | 66 | 357 | 0 |
HO780931 | 331 | 112 | 440 | 0 |
HO780931 | 51 | 429 | 479 | 0.00000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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