Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000174676 |
Family | GH3 |
Protein Properties | Length: 1279 Molecular Weight: 141474 Isoelectric Point: 7.6382 |
Chromosome | Chromosome/Scaffold: 004133333 Start: 81 End: 7574 |
Description | beta-xylosidase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 80 | 327 | 0 |
DVPRLGIQGYEWWSEALHGVSNVGPGTKFGGTFLGATSFPQVITTAASFNESLWEEIGRVVSDEARAMYNGGAAGLTFWSPNVNIFRDPRWGRGQETPGE DPVLAAKYGARYVKGLQGDGXGNRLKVAACCKHYTAYDLDNWNGVDRFHFNARVSKQDLEDTYDVPFRACVVDGNVASVMCSYNQVNGKPTCADPNLLKG TIRGQWRLNGYIVSDCDSVGVYYDDQHYTKTPEEAAADAIKAGLDLDC |
Full Sequence |
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Protein Sequence Length: 1279 Download |
MAYNIAKLLS LFSLLFLFSS LCNIAVVHAR PPFACDPRNP ITRXLKFCRV RVPIXDRVHD 60 LIGRLTLQEK IRLLVNNAID VPRLGIQGYE WWSEALHGVS NVGPGTKFGG TFLGATSFPQ 120 VITTAASFNE SLWEEIGRVV SDEARAMYNG GAAGLTFWSP NVNIFRDPRW GRGQETPGED 180 PVLAAKYGAR YVKGLQGDGX GNRLKVAACC KHYTAYDLDN WNGVDRFHFN ARVSKQDLED 240 TYDVPFRACV VDGNVASVMC SYNQVNGKPT CADPNLLKGT IRGQWRLNGY IVSDCDSVGV 300 YYDDQHYTKT PEEAAADAIK AGLDLDCGPF LAIHTEAAVR TGLVNEIDIN YALANTITVQ 360 MRLGMFDGEP STQRYGNLGP ADVCKMSSNE LALEAARQGI VLLENRGNSL PLSTTRHRTV 420 AVIGPNSDVT ETMIGNYAGV ACGYTTPLQG IARYTRTIHQ AGCSNVHCNG NQLIGAAEAX 480 ARQADATVLV IGLDQSIEAE FRDRTNLLLP GHQQEXVSMV ARASRGPTIL VIMSGSPIDV 540 TFAKNDPRIG AIIWVGYPGQ AGGTAIADVL FGTTNPSGKL PMTWYPQNYV AKLPMTDMAM 600 RANPARGYPG RTYRFYKGPV VFPFGLGLSY TRFSYTLAQG PTLVSVPLTS LVAAKNTTML 660 NNNGVRVSHI NCDSLSLDIH VDVKNTGTMD GTHTLLVFVT PPAEKWAPNK QLVGFHKVHI 720 VAGSERRVRV GVHVCKHLSV VDKFGIRRIP LGEHKLEIGD LKHHVSVEAN LGEIKCNVLP 780 DKLIQLTFNI MVNSQINPTT TILAFYVTMT THGTLHTGIV YSAASHPTLT TFSDSDWAAD 840 LNTRRSVTGY VVYLGENPIS WQSKKQTSVS RSFTEAEYKA LAHTAADIAW VRQILRDLKC 900 SVPQPPIIHC DNMSAIALSS NPVFHSRIKH LDTDYHFVRE RVQRRDLEVL YIPTEEQTAD 960 ILTKGLHVDI MADSSVKIEA LLGMLXVKLQ DDNFVKWGYQ FQSVLRGYDL FDFFLGEIPC 1020 PSKFVISPXT GITKEVSAEY KEWVRKDMAL LSLLIATLSD EAMEHVIGCR TSHEAWTCLQ 1080 ERFASISVVR VNQLKTELHT AQKGGESVDK FLMRLKNIRD QLVSVGERIS DNDLMIAVLF 1140 GLPADFEMIR TVILARDTTL SLKDFRLNFL LQKGVLNPRC NLCQVLWLQC VFKVKVLALS 1200 DIRAMNMVKA QIHKGCKEDI MESNLEIAFK VDLVFWAMEI TGTITILEMV ATTISRSLGM 1260 EITTLRIHLP GFITGMQVE |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 4.0e-55 | 76 | 452 | 383 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 4.0e-62 | 59 | 350 | 299 | + Glycosyl hydrolase family 3 N terminal domain. | ||
cd09272 | RNase_HI_RT_Ty1 | 2.0e-70 | 832 | 969 | 138 | + Ty1/Copia family of RNase HI in long-term repeat retroelements. Ribonuclease H (RNase H) enzymes are divided into two major families, Type 1 and Type 2, based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes. RNase HI has also been observed as adjunct domains to the reverse transcriptase gene in retroviruses, in long-term repeat (LTR)-bearing and non-LTR retrotransposons. RNase HI in LTR retrotransposons perform degradation of the original RNA template, generation of a polypurine tract (the primer for plus-strand DNA synthesis), and final removal of RNA primers from newly synthesized minus and plus strands. The catalytic residues for RNase H enzymatic activity, three aspartatic acids and one glutamatic acid residue (DEDD) are unvaried across all RNase H domains. Phylogenetic patterns of RNase HI of LTR retroelements is classified into five major families, Ty3/Gypsy, Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate retroviruses. Ty1/Copia family is widely distributed among the genomes of plants, fungi and animals. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription. | ||
PRK15098 | PRK15098 | 9.0e-78 | 116 | 729 | 668 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 29 | 769 | 758 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS17751.2 | 0 | 1 | 775 | 1 | 771 | beta xylosidase [Fragaria x ananassa] |
DDBJ | BAD98523.1 | 0 | 1 | 775 | 1 | 773 | alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] |
DDBJ | BAF79669.1 | 0 | 1 | 775 | 1 | 773 | beta-D-xylosidase [Pyrus pyrifolia] |
RefSeq | XP_002276351.1 | 0 | 12 | 775 | 6 | 768 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316021.1 | 0 | 26 | 775 | 21 | 767 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 116 | 728 | 91 | 692 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |
PDB | 3u48_A | 0 | 116 | 728 | 91 | 692 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |
PDB | 3u4a_B | 0 | 116 | 728 | 91 | 692 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |
PDB | 3u4a_A | 0 | 116 | 728 | 91 | 692 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |
PDB | 2x41_A | 3e-40 | 56 | 725 | 2 | 666 | A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes |