Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000175757 |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 49551.1 Isoelectric Point: 5.1294 |
Chromosome | Chromosome/Scaffold: 006260462 Start: 12245 End: 14852 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 418 | 0 |
ACNTTKAVFLVPQGRRYLVNATKFQGPCADNLIIQIEGTIVAPDEPNNWDPNFPRTWLDFTKLNGVLFQGHGVIDGSGSKWWAASCKTNKTNPCRGAPTA FTIDKSSAINVKGITIKNAQQMNFVISQCDAVRVNAVQVSAPGDSPNTDGIHITASTNVILQDCKIGTGDDCVSIVNGTSGIKMKRIFCGPGHGISIGSL GKDNSTAMVTKVVLDTAYLRETTNGLRIKTWQGGAGYVRGVRFQNVKMENVSNPIIIDQFYCDSPKTCQNLTSAVQITQVMYKNIYGTTKSAKAMKFACS DTVPCRNIVLTDVNLEKEDGQVETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 457 Download |
MDNLFAVFVF GMLIAVFGVA RDVVCDNMSM LHELESFNIE EDNELNVFDI PTWKSERGSK 60 TLVNVDSFGA AGDGVSDDTQ AFQKAWGIAC NTTKAVFLVP QGRRYLVNAT KFQGPCADNL 120 IIQIEGTIVA PDEPNNWDPN FPRTWLDFTK LNGVLFQGHG VIDGSGSKWW AASCKTNKTN 180 PCRGAPTAFT IDKSSAINVK GITIKNAQQM NFVISQCDAV RVNAVQVSAP GDSPNTDGIH 240 ITASTNVILQ DCKIGTGDDC VSIVNGTSGI KMKRIFCGPG HGISIGSLGK DNSTAMVTKV 300 VLDTAYLRET TNGLRIKTWQ GGAGYVRGVR FQNVKMENVS NPIIIDQFYC DSPKTCQNLT 360 SAVQITQVMY KNIYGTTKSA KAMKFACSDT VPCRNIVLTD VNLEKEDGQV ETYCNSAQGF 420 GYGIVHPSAE CLNSHDKETS EAELADLTTA DIVHTEL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-84 | 64 | 444 | 384 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 91 | 404 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 1.0e-95 | 59 | 448 | 399 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-115 | 59 | 404 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-144 | 59 | 434 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 14 | 446 | 16 | 454 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 18 | 457 | 18 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 457 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 437 | 1 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 457 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 158 | 349 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-19 | 55 | 422 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 6e-18 | 157 | 415 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 6e-18 | 157 | 415 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 6e-18 | 157 | 415 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |