Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000176123 |
Family | GH28 |
Protein Properties | Length: 312 Molecular Weight: 33372.1 Isoelectric Point: 8.735 |
Chromosome | Chromosome/Scaffold: 008398407 Start: 2802 End: 4549 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 148 | 295 | 7.00649e-45 |
RITCGPGHGISIGSLGRYPNEEPVVGIRVKNCTLTNTSNGVRIKTWPASPSDGIASDIHFDDIIMVNVSNPVLIDQQYCPWNQYKQNIPSKVKISNVSFK NIKGSSATPFAVQIVCSSGIPCENVELADIDLTYNGNKGCLTSQRSNM |
Full Sequence |
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Protein Sequence Length: 312 Download |
MGATEVNPRV KVKVQETQAE VGVFDVTSAT YGAKPGSDIR QALAKAWTDA CASPTASKVV 60 VPRGTYMLTE ASFKGPCKAP IEIQVQGKLQ APVYGGKLTK PDTWVGFEHI NMLTVSGGGT 120 FDGQGALAWK QNDCNKNKDC KFIAINMRIT CGPGHGISIG SLGRYPNEEP VVGIRVKNCT 180 LTNTSNGVRI KTWPASPSDG IASDIHFDDI IMVNVSNPVL IDQQYCPWNQ YKQNIPSKVK 240 ISNVSFKNIK GSSATPFAVQ IVCSSGIPCE NVELADIDLT YNGNKGCLTS QRSNMNPTIT 300 RVPKALACGT SA |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-13 | 51 | 130 | 81 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-17 | 24 | 129 | 108 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 7.0e-38 | 149 | 283 | 136 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-50 | 147 | 281 | 135 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-56 | 148 | 292 | 146 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 8e-31 | 22 | 149 | 29 | 151 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89476.1 | 0 | 148 | 308 | 234 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 2e-31 | 22 | 149 | 29 | 151 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 149 | 308 | 235 | 393 | polygalacturonase [Salix gilgiana] |
EMBL | CBI22049.1 | 0 | 23 | 299 | 27 | 325 | unnamed protein product [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.00000005 | 124 | 280 | 168 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000005 | 124 | 280 | 168 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000005 | 124 | 280 | 168 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000005 | 124 | 280 | 168 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.00000005 | 124 | 280 | 168 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO417950 | 152 | 148 | 299 | 0 |
CN496790 | 144 | 148 | 291 | 0 |
CN491697 | 144 | 148 | 291 | 0 |
GT312078 | 165 | 148 | 312 | 0 |
BJ575571 | 152 | 149 | 300 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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