y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000181608 |
Family | PL1 |
Protein Properties | Length: 458 Molecular Weight: 50466.3 Isoelectric Point: 8.1345 |
Chromosome | Chromosome/Scaffold: 007844642 Start: 1423 End: 4800 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 171 | 377 | 0 |
VIQXEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGGCITIQYVTNIIIHGLHIHDCKPTGNALVRSSPTHFGWRTMADGDAVSIFGSSHIWV DHNSLSNCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINS QGNRYAA |
Full Sequence |
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Protein Sequence Length: 458 Download |
MAVFDSKKKW VGAFMMVLLM FYFAAAAVSE ISRNRNGGRD KLQSSSDSSM AARVAEDDQG 60 FNKHAVEDPE EIASMVDMWI FDLSALRGGG SIRNSTERRK LGYFSCGTGN PXDDCWRCDP 120 NWHKNRKRLA DCGIGFGRNA IGGRDGRFYV VTDPNDDDPV NPRAGTLRHA VIQXEPLWIV 180 FKRDMVIQLK QELIMNSFKT IDGRGVNVHI ANGGCITIQY VTNIIIHGLH IHDCKPTGNA 240 LVRSSPTHFG WRTMADGDAV SIFGSSHIWV DHNSLSNCAD GLVDAVMGST AITISNNHMT 300 HHNEVMLLGH SDSYTRDKQM QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI 360 GGSGNPTINS QGNRYAAPTN PFAKEVTKRV ETATTEWKNW NWRSEGDLLL NGAYFTPSGA 420 GASASYARAS SLGAKSSAMV GSITSGSGAL PCRRGHPC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-27 | 197 | 390 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-70 | 190 | 375 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-79 | 184 | 378 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 91 | 458 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ADD62392.1 | 0 | 1 | 458 | 1 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 25 | 458 | 4 | 425 | pectate lyase [Prunus persica] |
RefSeq | XP_002297822.1 | 0 | 8 | 458 | 5 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 28 | 458 | 35 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 110 | 419 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 110 | 419 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-17 | 179 | 375 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000003 | 200 | 352 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000009 | 200 | 450 | 90 | 361 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |