| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000181630 |
| Family | GH28 |
| Protein Properties | Length: 329 Molecular Weight: 36206 Isoelectric Point: 7.6142 |
| Chromosome | Chromosome/Scaffold: 007637486 Start: 7273 End: 9653 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 23 | 320 | 0 |
| LTIHQIFRLYMVNGLKIEGDGVIDGRGDIWWSQAHKPGVRPTWIDTRQQPKKPYNYIQLQWCNHISPPNNSTWFEPYTDGIDIGQSRNVQIHDCSIGTGD DCVAIGGGSSYPTPTHHLIPTLTTYNAQIQAHLSLIACRICKWTRHASDMVRYVSGSTIIGSLGRGGLTDNVEKVYVRDSVLKGTKNGLRIKTWQGGSGY ARKISFEGITLDTVAKPIIIDQFYCDQQPPCQNQSTSAVKVSDVYFSRVHGTTSTDKAVELKCSQIVACTNIVLTDINIVSASPEDTTTGAYCFNAYG | |||
| Full Sequence |
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| Protein Sequence Length: 329 Download |
| MFQGPCSSPT VNIQVYQECC YILTIHQIFR LYMVNGLKIE GDGVIDGRGD IWWSQAHKPG 60 VRPTWIDTRQ QPKKPYNYIQ LQWCNHISPP NNSTWFEPYT DGIDIGQSRN VQIHDCSIGT 120 GDDCVAIGGG SSYPTPTHHL IPTLTTYNAQ IQAHLSLIAC RICKWTRHAS DMVRYVSGST 180 IIGSLGRGGL TDNVEKVYVR DSVLKGTKNG LRIKTWQGGS GYARKISFEG ITLDTVAKPI 240 IIDQFYCDQQ PPCQNQSTSA VKVSDVYFSR VHGTTSTDKA VELKCSQIVA CTNIVLTDIN 300 IVSASPEDTT TGAYCFNAYG SAGPTVPLV |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-39 | 34 | 318 | 312 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-41 | 2 | 315 | 352 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 2.0e-44 | 2 | 307 | 322 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-51 | 34 | 327 | 315 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-55 | 2 | 327 | 348 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62658.1 | 0 | 1 | 327 | 105 | 428 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266797.1 | 0 | 1 | 327 | 68 | 367 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002266960.1 | 0 | 2 | 329 | 71 | 386 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002517618.1 | 7e-30 | 34 | 305 | 101 | 351 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 0 | 86 | 329 | 510 | 714 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000007 | 39 | 250 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.0000002 | 100 | 293 | 154 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000002 | 100 | 293 | 154 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000002 | 100 | 293 | 154 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000002 | 100 | 293 | 154 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR556291 | 229 | 74 | 301 | 3.00018e-42 |
| DR546551 | 229 | 74 | 301 | 3.99931e-42 |
| BG452808 | 224 | 98 | 320 | 9.99967e-42 |
| FN025824 | 233 | 97 | 329 | 9.99995e-41 |
| DV135677 | 214 | 110 | 320 | 1e-39 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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