y
Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000184620 |
Family | GH28 |
Protein Properties | Length: 447 Molecular Weight: 48393 Isoelectric Point: 4.4523 |
Chromosome | Chromosome/Scaffold: 010208293 Start: 2918 End: 4787 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 96 | 268 | 0 |
XPQAHIGINGCDNADVLHLNVHAPENSPNTDSIDISFLSXISIRDSFIRTSDDCIAINGGCSFLYITNICMRTSVGSLGADGATEKVDNIYVKDCSFTXT INGARIKTWQGGSGYARNITFERIKLDGAQNPIVIDQYYCNEDQNCKSQXSAWGDATYINFEGTPATEGXSIG |
Full Sequence |
---|
Protein Sequence Length: 447 Download |
MRFNIXVRIL VFFFLTXSLF IGIAXSQKIF DITKYGAVGD GRTDDSPAFL KSWGDICNGE 60 NDXVLTLLVX EGKTFMLQPI KFEGPCXPKS LLYIXXPQAH IGINGCDNAD VLHLNVHAPE 120 NSPNTDSIDI SFLSXISIRD SFIRTSDDCI AINGGCSFLY ITNICMRTSV GSLGADGATE 180 KVDNIYVKDC SFTXTINGAR IKTWQGGSGY ARNITFERIK LDGAQNPIVI DQYYCNEDQN 240 CKSQXSAWGD ATYINFEGTP ATEGXSIGTT VPNVLCLKSS GTKHAXPTEP VTPATADPKI 300 LPPPSPINPP PLPIMPPPLQ PXPTVPLPSP XPPVPTPVPI VPPPXPPAKP IKPLPSPPIV 360 PIXPLLPPPP KPVIPPPLEP ITPPPPEDII PLPPDAISPL PSPPEPPTPP TPVPHAEGQL 420 DXMEAPREGD ESDIYNFNNN YFSYYFV 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-15 | 9 | 91 | 83 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-15 | 13 | 86 | 75 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-28 | 97 | 263 | 172 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 6.0e-34 | 91 | 263 | 181 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-36 | 94 | 284 | 197 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002266797.1 | 0 | 30 | 279 | 18 | 329 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0.000000000009 | 22 | 101 | 19 | 97 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324855.1 | 0 | 77 | 263 | 148 | 342 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 89 | 263 | 159 | 339 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 1.96182e-44 | 29 | 365 | 411 | 759 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.0000000002 | 112 | 236 | 133 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000002 | 112 | 236 | 133 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000002 | 112 | 236 | 133 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000002 | 112 | 236 | 133 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.0000000002 | 112 | 236 | 133 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |