Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000186551 |
Family | PL4 |
Protein Properties | Length: 268 Molecular Weight: 30871.6 Isoelectric Point: 4.6039 |
Chromosome | Chromosome/Scaffold: 010898430 Start: 6151 End: 8023 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 1 | 239 | 0 |
GYQFWTRADEKGYYSIENIREGDYNLYAWCPGFIGDYRYDATISITAGCDIDVDDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVNHPDR FRQYGLWERYQELYPDEDLIYSIGTSDYTKDWFFAQVPRKKDDETYQGTTWQIKFQLKHFSESVTLKLRIALATANIAELQIRINDSKADPPLFTTGVIG KDNTIARHGIHGLYWLYNINIPGTLLVEGANTLFLTQTM |
Full Sequence |
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Protein Sequence Length: 268 Download |
GYQFWTRADE KGYYSIENIR EGDYNLYAWC PGFIGDYRYD ATISITAGCD IDVDDIVYEP 60 PRDGPTLWEI GIPDRSAAEF YVPDPNPMYI NKLYVNHPDR FRQYGLWERY QELYPDEDLI 120 YSIGTSDYTK DWFFAQVPRK KDDETYQGTT WQIKFQLKHF SESVTLKLRI ALATANIAEL 180 QIRINDSKAD PPLFTTGVIG KDNTIARHGI HGLYWLYNIN IPGTLLVEGA NTLFLTQTMS 240 TRPLAPFHGL MYDYIRLEGP SSSSSSTT |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.008 | 6 | 33 | 28 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 2.0e-18 | 1 | 56 | 56 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 5.0e-49 | 68 | 258 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 2 | 268 | 360 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285627.1 | 0 | 2 | 268 | 242 | 505 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 1 | 268 | 375 | 639 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 2 | 264 | 379 | 637 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 265 | 378 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FD941014 | 253 | 9 | 260 | 0 |
FD943935 | 249 | 12 | 260 | 0 |
FY792769 | 227 | 1 | 227 | 0 |
DT339111 | 255 | 6 | 260 | 0 |
GO843500 | 254 | 7 | 260 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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