| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000188563 |
| Family | GH35 |
| Protein Properties | Length: 2155 Molecular Weight: 239648 Isoelectric Point: 8.4194 |
| Chromosome | Chromosome/Scaffold: 009274267 Start: 8678 End: 30098 |
| Description | beta-galactosidase 3 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 1071 | 1374 | 0 |
| LVIDGQRRLLFSGSIHYPRSTPEMWEGLIQXAKDGGLDAIDTYVFWNLHEPSPGNYNFEGRNDLVRFIKTVHKAGLYVHLRIGPYICSEWNFGGFPVWLK FVPGISFRTDNEPFKSAMQKFTQKVVQLMKNEKLFESQGGPIILSQIENEYEPESKAFGASGYAYMTWAAKMAVGMGTGVPWVMCKEDDAPDPVINTCNG FYCDYFSPNKPYKPTMWTEAWSGWFTEFGGPIYQRPVEDLAFAVARFIQKGGSFINYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIRQPKYGHLK ELHK | |||
| Full Sequence |
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| Protein Sequence Length: 2155 Download |
| METSLQPQLS GSTEHRGFGF VQFAVIEDAN RAVELKNGLS IGGRKIAAKH AMHRAPLEQR 60 RPKTNQGIDV DETVKTENDK DSENPQGEKD ASKSQERVVT LEKNTKKPVK TRKTAALSND 120 QVAKVGGSEK QRVARTVIFG GLLNAGMAED VHRRAREIGD VCSITYPLPK EELEQHGVHD 180 FAFAGETLVR LVQDGCKMDA SSVLYNSVRS AHASVSMLHQ KEIKGGIVWA RQLGGXVPRL 240 RSGSSLLEIF LSRLSKGFAF VKFTGKQDAE NAIKKLNGQM LHKRSIAVDW AVSKKIYGSG 300 NNALASADGQ EDERNGESDS SSDDFEDDAG DVGKKSHHHD GADNALDDNT IEKKDVPTEI 360 NFEEEADIAR KVLKNFITPS GIATPDDDST LPKRNKESSI DMSVDKPKKL SSETTKASEI 420 DKPGKKSKTT ASNLIDESVD EPNRPKKMSS EITKASEFDK PGNKSKTTAS NLIDESVDEP 480 NNSSLETAKA SDVTEPGKLS TSTVPNLEQA DEVEDLHRTI FISNLPFEIT NEDVKQRFST 540 FGKVDSFVPV LHPVTKRPKG SGFLRFKTKD GASSAVSAGN AESGSGITLK GRQLTVLQAL 600 DKKSAHDKEL NVAKKEDLDH RNLYLAKEGL VLEGTPAAKG VSASDMLKRQ MAERSKMSKL 660 QSPNFHVSQT RIVIKNLPKS MNEKELKRLC IDAVTSRATK QKPVIRQIKF LEDVKKGKLN 720 TKNHSRGAAF VEFTEHQHAL VALRVLNNNP GTFGPDHRPI VEFALDNVQK LKLRNAKIQG 780 QQNAARRNPG VQQKDGSNRP DADPSKKFNK RKQSVDEQSL DESVPNKEDE EENRVGDGTA 840 TDQLRAPKRQ KQGPFGKEKK ISSTKVSGGS TENSESSKHE PNNHQDGAKP GGRGRSFGRE 900 SMAIDAQKSK SVGKANVQPQ KRKLQAQKEV EGGENETRRK RPKKNKDPLG RDVVDKLDLL 960 IEQYRSKHSQ RSSAQTDGEK QDFNGNYVLS DSVCVNAAMD FCSFGTRVEM PPLPCPMCFL 1020 ENHKHYNEVG RRRMGANSSA LSWVLLCCCI VWSSVYVEQT ECNVVFDRKA LVIDGQRRLL 1080 FSGSIHYPRS TPEMWEGLIQ XAKDGGLDAI DTYVFWNLHE PSPGNYNFEG RNDLVRFIKT 1140 VHKAGLYVHL RIGPYICSEW NFGGFPVWLK FVPGISFRTD NEPFKSAMQK FTQKVVQLMK 1200 NEKLFESQGG PIILSQIENE YEPESKAFGA SGYAYMTWAA KMAVGMGTGV PWVMCKEDDA 1260 PDPVINTCNG FYCDYFSPNK PYKPTMWTEA WSGWFTEFGG PIYQRPVEDL AFAVARFIQK 1320 GGSFINYYMY HGGTNFGRTA GGPFITTSYD YDAPIDEYGL IRQPKYGHLK ELHKAVKLCE 1380 LALLNADPTV TTLGSYEQAH VFSSKSGGCA AFLSNFNTKS AAKVTFNNMN FHLPPWSISI 1440 LPDCKNVAFN TARVRVQTFQ TQLLPTNSEL HSWGIFNEDV SSVAGDTTIT VVGLLDQLNI 1500 TRDSSDYLWY TTSVDIDPSE SFLRGGQHPS LTVQSAGDAM HVFINDQLSG SASGTREHRR 1560 FTFTGNVNLH AGLNKISLLS IAVGLANNGP HFETRNTGVL GPVALHGLDH GTRDLSWQQW 1620 SYQVGLKGEA SNLDSPNSIS AVDWMTGSLV AQKQQPLTWY KAYFDEPNGD EPLALDMGSM 1680 GKGQAWINGQ SIGRYWTIYA DGDCSACTYS GTFRPKKCQF GCQHPTQQWY HVPRSWLKPS 1740 KNLLVVFEEI GGDVSKVALV KKSVTSVCAE VSENHPHITN WHTESHGQTE VQQKPEIGLH 1800 CTDGHSISAI KFSSFGTPSG SCGKFQHGTC HAPNSNAVLQ KECLGCKPKR LYKEVQMNKL 1860 LKCYSTIWVS KLEIAQYSIL RNTIKKIPDN FKSNLTIPTG EVKTISSGDC VLMRPSEPGK 1920 PSYVAKIERI EADSRGSNVK VHVQWYYRPE ESLGGRRQFH GSKEVFLSDH HDVQSADTIE 1980 AKCTVHTFKS YTKLDAVGND DFFCRFEYNS STGAFNPDRV AVKCHRSALL KRKNQALKRR 2040 YCKCEMPYNP DDLMVQCEGC SDWFHPACID MNIQEAKRLD HFFCEGCSSE GQKKLQNSHT 2100 ASRHPDTKLW PQFELHVLWK LTRYWTCFGF LYLLLNDPKN IGTTDAYIVS VLRPD 2160 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd04714 | BAH_BAHCC1 | 5.0e-41 | 1904 | 2017 | 120 | + BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions. | ||
| cd12416 | RRM4_RBM28_like | 4.0e-44 | 670 | 767 | 98 | + RNA recognition motif 4 in RNA-binding protein 28 (RBM28) and similar proteins. This subfamily corresponds to the RRM4 of RBM28 and Nop4p. RBM28 is a specific nucleolar component of the spliceosomal small nuclear ribonucleoproteins (snRNPs), possibly coordinating their transition through the nucleolus. It specifically associates with U1, U2, U4, U5, and U6 small nuclear RNAs (snRNAs), and may play a role in the maturation of both small nuclear and ribosomal RNAs. RBM28 has four RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an extremely acidic region between RRM2 and RRM3. The family also includes nucleolar protein 4 (Nop4p or Nop77p) encoded by YPL043W from Saccharomyces cerevisiae. It is an essential nucleolar protein involved in processing and maturation of 27S pre-rRNA and biogenesis of 60S ribosomal subunits. Nop4p also contains four RRMs. | ||
| pfam01301 | Glyco_hydro_35 | 3.0e-164 | 1070 | 1376 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1039 | 1845 | 808 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003676 | nucleic acid binding |
| GO:0003677 | DNA binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD91085.1 | 0 | 1034 | 1845 | 1 | 812 | beta-D-galactosidase [Pyrus pyrifolia] |
| DDBJ | BAF31234.1 | 0 | 1055 | 1860 | 21 | 824 | beta-D-galactosidase [Persea americana] |
| EMBL | CBI38026.1 | 0 | 1034 | 1845 | 1 | 808 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263382.1 | 0 | 1094 | 1845 | 1 | 752 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002274449.1 | 0 | 1034 | 1845 | 1 | 809 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 1.4013e-45 | 1068 | 1372 | 12 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 3e-39 | 1059 | 1372 | 6 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 3e-39 | 1059 | 1372 | 6 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_B | 3e-39 | 1059 | 1372 | 6 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778160 | 707 | 1058 | 1764 | 0 |
| HO780602 | 667 | 1114 | 1769 | 0 |
| HO795552 | 526 | 1154 | 1679 | 0 |
| HO795552 | 61 | 1055 | 1115 | 3e-32 |
| HO795552 | 51 | 1115 | 1165 | 3e-32 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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