Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000190165 |
Family | GH28 |
Protein Properties | Length: 528 Molecular Weight: 55699.1 Isoelectric Point: 10.1474 |
Chromosome | Chromosome/Scaffold: 010657492 Start: 11459 End: 13482 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 124 | 515 | 0 |
KGPTKVVIPKGTFLTGPVVFQGPCNSSTEPIVVEVQGYVKASTDLSQYSSPEWFSFELVDGLIVTGDGTFDGQGTWTTSGSKDSXKAAQAPSSXKFNKVN NSLIERITSLNSKXFHTHMFGCNNXTMRNVHLTAPGDSPNTDGVYISASXHIKVLNSVIATGGDCVSIGXGAYDVTVKNITCGPGXGISIGSLGKDPDEL SVSEIHVSNCTLRNTTYGARIKTSAGKSAGEVTGIVXEDIIMDQVQNPIIIDQYYGNTKVVKKIIDGNKKMXVPGNKKSVGAGLKKKVGAGLKKKVGAGS KKKVGVGKQMELQGGKKKSDGAGVPSRPVSKWKISDVHFRNIRGTSAGKVAVSLACSSVNPCEGVKFTDINLSYKGTSXKXTALKSECFNAQ |
Full Sequence |
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Protein Sequence Length: 528 Download |
MGGVARRTSA MAVFLLGFAL LSCVAQAASR GHLFRAGARR SXXTKRKVFD VTAFGAKTED 60 QMNRGSKKPN VVGKLSTGEL PGGGIPGLPG GTXEESYDDG EKIDDPNGLA FIRTWVAACR 120 GNYKGPTKVV IPKGTFLTGP VVFQGPCNSS TEPIVVEVQG YVKASTDLSQ YSSPEWFSFE 180 LVDGLIVTGD GTFDGQGTWT TSGSKDSXKA AQAPSSXKFN KVNNSLIERI TSLNSKXFHT 240 HMFGCNNXTM RNVHLTAPGD SPNTDGVYIS ASXHIKVLNS VIATGGDCVS IGXGAYDVTV 300 KNITCGPGXG ISIGSLGKDP DELSVSEIHV SNCTLRNTTY GARIKTSAGK SAGEVTGIVX 360 EDIIMDQVQN PIIIDQYYGN TKVVKKIIDG NKKMXVPGNK KSVGAGLKKK VGAGLKKKVG 420 AGSKKKVGVG KQMELQGGKK KSDGAGVPSR PVSKWKISDV HFRNIRGTSA GKVAVSLACS 480 SVNPCEGVKF TDINLSYKGT SXKXTALKSE CFNAQITPKG VQNPPLCR |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-8 | 451 | 512 | 62 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-12 | 449 | 527 | 79 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-48 | 99 | 396 | 302 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-52 | 126 | 382 | 258 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-63 | 110 | 378 | 275 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002301488.1 | 0 | 110 | 379 | 3 | 271 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301488.1 | 0.0000000001 | 453 | 528 | 279 | 353 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 8 | 379 | 2 | 332 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0.00000000005 | 446 | 528 | 336 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 110 | 380 | 1 | 270 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000006 | 187 | 378 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000002 | 177 | 380 | 70 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000002 | 177 | 380 | 70 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000002 | 177 | 380 | 70 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000002 | 177 | 380 | 70 | 267 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |