Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000191981 |
Family | GH28 |
Protein Properties | Length: 203 Molecular Weight: 22508.8 Isoelectric Point: 7.0186 |
Chromosome | Chromosome/Scaffold: 011389353 Start: 355 End: 1686 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 25 | 134 | 5.6e-24 |
KIIIQGLTILAPIDSPNTDGIDPAVKSGWDKYGIKVGIPTEHLVFRRLTCISPDSATIALGSEMSGGIRDVRAEDITAIDTQSSVRIKTAVGRGAYVEDI YVRRITLKSM |
Full Sequence |
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Protein Sequence Length: 203 Download |
MNRMSQSGLF FQYCLIWEXQ RCSCKIIIQG LTILAPIDSP NTDGIDPAVK SGWDKYGIKV 60 GIPTEHLVFR RLTCISPDSA TIALGSEMSG GIRDVRAEDI TAIDTQSSVR IKTAVGRGAY 120 VEDIYVRRIT LKSMKVTEKP KKLQWNCTDV QGITGNVTPK ACDLLPEKQE VVGCAFPDDR 180 LAIEDVKLVA YSASTPLFWE FLL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 0.003 | 26 | 196 | 196 | + polygalacturonase | ||
PLN02793 | PLN02793 | 0.0003 | 25 | 134 | 123 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 0.0002 | 26 | 135 | 125 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-7 | 23 | 189 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-13 | 27 | 138 | 132 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34379.1 | 0 | 23 | 188 | 220 | 423 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 17 | 195 | 192 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 23 | 194 | 220 | 476 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 23 | 135 | 220 | 352 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0.00000000000006 | 129 | 195 | 409 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000000000006 | 23 | 125 | 221 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000000000006 | 23 | 125 | 221 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000000000006 | 23 | 125 | 221 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000000000006 | 23 | 125 | 221 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO512791 | 133 | 23 | 135 | 0 |
CN993598 | 133 | 23 | 135 | 0 |
DT525200 | 204 | 26 | 188 | 0 |
CV262666 | 204 | 26 | 188 | 0 |
GW403004 | 133 | 23 | 135 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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