y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000196711 |
Family | PL1 |
Protein Properties | Length: 331 Molecular Weight: 37248 Isoelectric Point: 7.2456 |
Chromosome | Chromosome/Scaffold: 012355308 Start: 4599 End: 6964 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 61 | 240 | 0 |
IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISR CCFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASIESQIYSQCNIYEA |
Full Sequence |
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Protein Sequence Length: 331 Download |
MASLPYAEVD FSLRSMAGRA EGFGRFAIGG LNGPVYFVTT LADDGPGSLR EGCRKQXPLW 60 IVFEVSGTIH LSSYLSVSSY KTIDGRGQRI KLTGKGLRLK ECEHIIVCNL EFEGGRGHDV 120 DGIQIKPNSR HIWIDRCSLR DYDDGLIDIT RQSTDITISR CCFAQHDKTM LIGADPSHVG 180 DRCIRVTIHH CFFDGTRQRQ PRLRFGKVHL YNNYTRNWGI YAVCASIESQ IYSQCNIYEA 240 GNKKKTFEYY TEKAADREVA KSGFIISEGD LFLNGAQPCT LTGFSEECLF HPSEFYPQWT 300 MEAASDSLKA ILQILTGWQS IHRPAEQVVT V 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 3.0e-37 | 62 | 236 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 2.0e-44 | 29 | 247 | 238 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 5.0e-67 | 75 | 242 | 180 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB75748.1 | 0 | 1 | 329 | 1 | 339 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_191074.2 | 0 | 1 | 329 | 1 | 329 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002276049.1 | 0 | 1 | 331 | 1 | 331 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311134.1 | 0 | 1 | 325 | 1 | 325 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 5e-39 | 10 | 304 | 15 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 5e-39 | 10 | 304 | 15 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-28 | 3 | 238 | 1 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-26 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3vmw_A | 4e-20 | 82 | 239 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY275282 | 331 | 1 | 330 | 0 |
DY277275 | 310 | 4 | 313 | 0 |
JG177860 | 310 | 21 | 330 | 0 |
DW066041 | 301 | 25 | 325 | 0 |
DY277275 | 27 | 303 | 329 | 0.53 |
Sequence Alignments (This image is cropped. Click for full image.) |
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