Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000201484 |
Family | GH28 |
Protein Properties | Length: 460 Molecular Weight: 50575.2 Isoelectric Point: 7.7758 |
Chromosome | Chromosome/Scaffold: 01264561 Start: 4376 End: 7575 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 416 | 0 |
SACQTEDSEVLVPKGHSFMIQSTIFTGPCSSGLKFQIDGTLVPPDGPDSWPKKNSKRQWLVFYRXNGMSMQGGGVIDGRGEKWWDLPCKPHKGINGTTQP GPCDSPVAIRFFMSSNLRVQGLKVKNSPQFHFRFDNCQHVHIESLTIKAPALSPNTDGIHIENTNNVKLYNSLISNGDDCVSIGAGCYNVDIRNITCGPS HGISIGSLGNLHSRACVSNITVRDSIIKHSDNGVRIKTWQGGSGSVSRIXFHNIHMDTVRNPILLDQYYCLTKNCPNQTSAVQISDILYTNIKGTYDVRS PPMNFACSDSMPCTNLTLSEVELYPA |
Full Sequence |
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Protein Sequence Length: 460 Download |
MKVTYLHSKL IITLVNYPSS QDWRETYLHW DQGRSHPYTI SLPPSPSPQA ASPSYNAISV 60 HGNTVFNVRS FGAVGDGVAD DTQAFKMAWD SACQTEDSEV LVPKGHSFMI QSTIFTGPCS 120 SGLKFQIDGT LVPPDGPDSW PKKNSKRQWL VFYRXNGMSM QGGGVIDGRG EKWWDLPCKP 180 HKGINGTTQP GPCDSPVAIR FFMSSNLRVQ GLKVKNSPQF HFRFDNCQHV HIESLTIKAP 240 ALSPNTDGIH IENTNNVKLY NSLISNGDDC VSIGAGCYNV DIRNITCGPS HGISIGSLGN 300 LHSRACVSNI TVRDSIIKHS DNGVRIKTWQ GGSGSVSRIX FHNIHMDTVR NPILLDQYYC 360 LTKNCPNQTS AVQISDILYT NIKGTYDVRS PPMNFACSDS MPCTNLTLSE VELYPAQGVY 420 VAXPICWSAY GTVQSLTIPP VXCLLGGTPQ RLPQNDNERC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 7.0e-83 | 56 | 440 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-84 | 63 | 444 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 98 | 413 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-104 | 59 | 413 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-120 | 65 | 440 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 40 | 460 | 63 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 40 | 460 | 44 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 38 | 455 | 57 | 467 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 65 | 460 | 42 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 40 | 460 | 29 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-26 | 123 | 417 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-26 | 123 | 417 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-26 | 123 | 417 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-26 | 123 | 417 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-26 | 123 | 417 | 36 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 322 | 73 | 394 | 0 |
DR450143 | 293 | 110 | 402 | 0 |
DY277859 | 353 | 65 | 414 | 0 |
DV135481 | 289 | 75 | 361 | 0 |
CX663441 | 275 | 176 | 450 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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