Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000201485 |
Family | GH28 |
Protein Properties | Length: 496 Molecular Weight: 55174.4 Isoelectric Point: 6.7017 |
Chromosome | Chromosome/Scaffold: 01264561 Start: 10000 End: 12201 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 121 | 451 | 0 |
AVMFLVPNNLSFLIQPIVFEGPCKSRLVFQIEGTLMPPDGPDQWPPNTKRQDWLLFKEVHRMLMQGNGLLNGXGEKWWDLPCKPHKNYMPADDINFVSML EQGGKGSCDSPSIIRFSKGSDLFVRGLRLENSPKIHIRFDSCEHVSVESISIISPEDSPNTDGIHIEDTTNAEIHHSTISTGDDCVSIGTGCYNVDISYM TCGPSHGISIGSLGEGNSQACVTNITVSDSIIKNSDNGVRIKTWQGGSGMVSKVTFKDIHMDTVLNPIIINQFYCLKKQCSNQTSAVLIDSVXFSNIMGT YDSRKPPIHLACSDSLPCKNLTLSGIHLLPA |
Full Sequence |
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Protein Sequence Length: 496 Download |
MKLXRFFKLL FVXLLVFVIV FFQKQHIKHK DLHXTSRILN WPWPSYHVPK IWPPYSSPSV 60 YPKSPSVQIP ESPPPDXLEN PYKLRVFNVL DFGAQGNGVK DDTEAFKDTW NAVCQAEIST 120 AVMFLVPNNL SFLIQPIVFE GPCKSRLVFQ IEGTLMPPDG PDQWPPNTKR QDWLLFKEVH 180 RMLMQGNGLL NGXGEKWWDL PCKPHKNYMP ADDINFVSML EQGGKGSCDS PSIIRFSKGS 240 DLFVRGLRLE NSPKIHIRFD SCEHVSVESI SIISPEDSPN TDGIHIEDTT NAEIHHSTIS 300 TGDDCVSIGT GCYNVDISYM TCGPSHGISI GSLGEGNSQA CVTNITVSDS IIKNSDNGVR 360 IKTWQGGSGM VSKVTFKDIH MDTVLNPIII NQFYCLKKQC SNQTSAVLID SVXFSNIMGT 420 YDSRKPPIHL ACSDSLPCKN LTLSGIHLLP AXGGTHLDPF CSQAFGTKDA FSTPRVPCLM 480 TGYPKGLENE VDRSCF |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-63 | 87 | 455 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-64 | 85 | 454 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-75 | 120 | 448 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-79 | 88 | 448 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-104 | 68 | 479 | 414 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 86 | 492 | 88 | 482 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 67 | 493 | 44 | 463 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 57 | 495 | 53 | 473 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 85 | 485 | 20 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 9 | 495 | 3 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-23 | 182 | 448 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-23 | 182 | 448 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-23 | 182 | 448 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-23 | 182 | 448 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-23 | 182 | 448 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |