Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000205197 |
Family | GH28 |
Protein Properties | Length: 431 Molecular Weight: 46312.8 Isoelectric Point: 5.2018 |
Chromosome | Chromosome/Scaffold: 019007403 Start: 7029 End: 10807 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 418 | 0 |
PTLVIPKGKTFLLQPIEFEGPCRPKRVHIQVTVVXNAASDNVFMSYVLGNVVAPKTVDAWKECPSSNTWLQFTNVANLILDGSGTINGQGSPWWSNSIAN QYISFINVNEKSCEGPRALHFNRCDNLRLSGLTHVNSPKAHIGINHCINVDVSHLTIIAPAESPNTDGIDISNSINVNIHDSFIGTGDDCIAINSGSSNI NITNIACGPGHGISVGSLGKNGAHETVENVYVRDCSFNGTQNGARIKTWQGGSGYAKNIVFEKITLVAAENPIIIDQFYCDAKAKVSCDNHQTSAVTVSE VRYIAFEGTSGSEEAITLNCNQIHGCQNIVMEEIHITSAVPSKKIYASCSHAKGT |
Full Sequence |
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Protein Sequence Length: 431 Download |
MQDRLVSLLI FSIVLSGLID IGYSERTFDV LNYRAVGDGE ADDSEAFVNA WKALCGADEV 60 GDVPTLVIPK GKTFLLQPIE FEGPCRPKRV HIQVTVVXNA ASDNVFMSYV LGNVVAPKTV 120 DAWKECPSSN TWLQFTNVAN LILDGSGTIN GQGSPWWSNS IANQYISFIN VNEKSCEGPR 180 ALHFNRCDNL RLSGLTHVNS PKAHIGINHC INVDVSHLTI IAPAESPNTD GIDISNSINV 240 NIHDSFIGTG DDCIAINSGS SNINITNIAC GPGHGISVGS LGKNGAHETV ENVYVRDCSF 300 NGTQNGARIK TWQGGSGYAK NIVFEKITLV AAENPIIIDQ FYCDAKAKVS CDNHQTSAVT 360 VSEVRYIAFE GTSGSEEAIT LNCNQIHGCQ NIVMEEIHIT SAVPSKKIYA SCSHAKGTCN 420 DSTVPVSCLD K |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-83 | 22 | 428 | 411 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-84 | 27 | 415 | 391 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-102 | 24 | 429 | 406 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-104 | 24 | 430 | 409 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-119 | 26 | 429 | 404 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 27 | 429 | 29 | 396 | PGN [Glycine max] |
EMBL | CAA20037.1 | 0 | 6 | 429 | 1 | 368 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 5 | 429 | 10 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 429 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 429 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 145 | 401 | 115 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-17 | 149 | 342 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-17 | 149 | 342 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-17 | 149 | 342 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-17 | 149 | 342 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |