| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000207322 |
| Family | GH28 |
| Protein Properties | Length: 139 Molecular Weight: 14775.6 Isoelectric Point: 6.2206 |
| Chromosome | Chromosome/Scaffold: 015967157 Start: 15919 End: 18125 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 21 | 125 | 1.7e-22 |
| SKWLGGYGYAKNISFKQIKLVAAKNPIIIDQHYCNGGHDCKNYTSAVSETDVSYSDFQRTSETEEAIKFDCSEPPGCINIVMDQINNTSAVAGKEVHAFC INVNG | |||
| Full Sequence |
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| Protein Sequence Length: 139 Download |
| MGNCGGLDAV DGGATSGCCR SKWLGGYGYA KNISFKQIKL VAAKNPIIID QHYCNGGHDC 60 KNYTSAVSET DVSYSDFQRT SETEEAIKFD CSEPPGCINI VMDQINNTSA VAGKEVHAFC 120 INVNGTSNAT VPVVPCLKK |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-14 | 28 | 139 | 112 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-15 | 10 | 131 | 126 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-18 | 13 | 138 | 130 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 4.0e-22 | 23 | 137 | 115 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 8.0e-23 | 15 | 138 | 124 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002324855.1 | 8e-36 | 23 | 138 | 281 | 395 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 3e-29 | 23 | 137 | 278 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515527.1 | 2e-31 | 13 | 134 | 230 | 349 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 6e-26 | 13 | 137 | 593 | 717 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002517618.1 | 0.00000000000002 | 14 | 115 | 255 | 355 | polygalacturonase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FN025824 | 116 | 23 | 138 | 2e-27 |
| GE483974 | 125 | 13 | 137 | 4e-26 |
| DR923379 | 115 | 23 | 137 | 5e-26 |
| DT731103 | 115 | 23 | 137 | 6e-26 |
| CB913712 | 127 | 13 | 139 | 9e-26 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Glycine max | Glyma09g36750.2.98.202 | Glyma09g36750.2.98.202 | |||
| Malus domestica | MDP0000773314 | ||||
| Prunus persica | ppa023418m | ppa020246m | ppa021254m.200.301 | ppa021254m.200.301 | |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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