Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000209147 |
Family | GH28 |
Protein Properties | Length: 549 Molecular Weight: 59268.6 Isoelectric Point: 9.1145 |
Chromosome | Chromosome/Scaffold: 01589082 Start: 32846 End: 36846 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 158 | 503 | 0 |
AAACKVEASSIIVPAGYQFLVGPISFSGPYCQKNILFQLDGTILAPTDSKSWGNGLLQWLEFTKLNGITVQGKGVIDGRGSPWWQDTPYGDPIDDDYKLI VPLNSSFQQRPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCQGVLVHDMSVSSPGDSPNTDGIHLQNSQRVLIHSTTLGCGD DCISIQTGCSDVYIHNVNCGPGHGISIGGLGKGNTKACVSNITVRDIMMHNTMNGVRVKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKTTCKNQ TSAVALSGITYERIRGTYTVKPVHFACSDSLPCVDVTLNGIQLKPL |
Full Sequence |
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Protein Sequence Length: 549 Download |
MSEFSFRSIT FMLVIAFLVW SSNFDACMGR RGRHWRQSRA SFASLSKKKG KSNHGGSGGG 60 HYHSGSGSKP KPPSHKKAPS PPRNKAQPPP HNKAPSPPQY KAPPPPQKGP STYNVLDFGA 120 KGNGDTDDTK AKGLCPTIAF ARIALACAIA LAFQAAWAAA CKVEASSIIV PAGYQFLVGP 180 ISFSGPYCQK NILFQLDGTI LAPTDSKSWG NGLLQWLEFT KLNGITVQGK GVIDGRGSPW 240 WQDTPYGDPI DDDYKLIVPL NSSFQQRPPM PIRSELSGKM PSIKPTALRF YGSFNVTVTG 300 ITIQNSPQCH LKFDNCQGVL VHDMSVSSPG DSPNTDGIHL QNSQRVLIHS TTLGCGDDCI 360 SIQTGCSDVY IHNVNCGPGH GISIGGLGKG NTKACVSNIT VRDIMMHNTM NGVRVKTWQG 420 GSGSVQGVLF SNIQVSEVQL PIVIDQFYCD KTTCKNQTSA VALSGITYER IRGTYTVKPV 480 HFACSDSLPC VDVTLNGIQL KPLQEKYHLY NPFCWQTFGE LRTPTVPPIG CLRLGKPSGN 540 QINSNHDAC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 8.0e-60 | 112 | 501 | 400 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 7.0e-62 | 113 | 500 | 391 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-67 | 112 | 501 | 399 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-73 | 165 | 500 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-84 | 115 | 528 | 422 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 549 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 4 | 549 | 7 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 549 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 549 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 549 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-21 | 279 | 451 | 145 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-20 | 225 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 225 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 225 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 225 | 500 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |