y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000209148 |
Family | GH28 |
Protein Properties | Length: 505 Molecular Weight: 54928 Isoelectric Point: 6.0487 |
Chromosome | Chromosome/Scaffold: 01589082 Start: 45939 End: 48634 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 460 | 0 |
ACNTTNAVFLVPQGHQYLVNATKFQGPCADNLIIQIEGTIVAPDEPNNWDPRFPRTWLDFTKLTGVLFQGNGVIDGSGSKWWAASCKKEQDKCISSRFII STVSKYLNPDHLQPCRGAPTAFTIDKSSAIKVKGITIKNAQQMNFVISHCDAVRVDAVLVSAPGDSPNTDGIHITASTNVVLQDCKIGTGDDCVSIVSGT SGIKMKRIFCGPGHGISHVLPKEIHSRLKLVSHRSRCNIGSLGKGNSTDMVTKVVLDTAYLRETTNGLRIKTWQGGSGYVRGIRFQNVRMENVSNPIIID QFYCDSPKPCQNLTSAVEITQVMYMNISGTTKSAKAMKFACSDTVPCSNIVLTDVNLEREDGQVETYCNSAQ |
Full Sequence |
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Protein Sequence Length: 505 Download |
MDKFPXVFGF GMLIAVFGVA GNLVSDSSCM LHELESFHIQ EDSELDVFDI PTWKSERGCK 60 ILVNVDSFGA VGDGVSDDTQ AFQKAWGIAC NTTNAVFLVP QGHQYLVNAT KFQGPCADNL 120 IIQIEGTIVA PDEPNNWDPR FPRTWLDFTK LTGVLFQGNG VIDGSGSKWW AASCKKEQDK 180 CISSRFIIST VSKYLNPDHL QPCRGAPTAF TIDKSSAIKV KGITIKNAQQ MNFVISHCDA 240 VRVDAVLVSA PGDSPNTDGI HITASTNVVL QDCKIGTGDD CVSIVSGTSG IKMKRIFCGP 300 GHGISHVLPK EIHSRLKLVS HRSRCNIGSL GKGNSTDMVT KVVLDTAYLR ETTNGLRIKT 360 WQGGSGYVRG IRFQNVRMEN VSNPIIIDQF YCDSPKPCQN LTSAVEITQV MYMNISGTTK 420 SAKAMKFACS DTVPCSNIVL TDVNLEREDG QVETYCNSAQ GFGYGIVHPS ADCLNSHDKD 480 STITDQTSEA ELADLTRADI VHTEL 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-75 | 64 | 451 | 391 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-86 | 91 | 446 | 356 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 5.0e-87 | 63 | 496 | 442 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-102 | 63 | 446 | 387 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-131 | 54 | 493 | 442 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173760.2 | 0 | 14 | 494 | 16 | 454 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002299032.1 | 0 | 1 | 505 | 1 | 469 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317091.1 | 0 | 30 | 505 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328587.1 | 0 | 1 | 486 | 1 | 445 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525360.1 | 0 | 1 | 505 | 1 | 510 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000002 | 204 | 391 | 148 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00000000000003 | 207 | 456 | 100 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000003 | 207 | 456 | 100 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000003 | 207 | 456 | 100 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000003 | 207 | 456 | 100 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |