y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000210289 |
Family | CBM57 |
Protein Properties | Length: 565 Molecular Weight: 61902.9 Isoelectric Point: 4.4417 |
Chromosome | Chromosome/Scaffold: 018018175 Start: 734 End: 4984 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 268 | 437 | 7.2e-28 |
SIKCGGKQMTGSDGILYEAEDSALGPATFSVTSTEKWAVSNAGLFSDRKYPSFLVNTLAQVTGTDVTPELFQTSRVSPGSLRYYGLGLENGPYTVTLHFA ETVYENRTSQKWESLGRRVFDIYIQGTRRTKDFDISKEAGGAKLGIMKRFNVSVSENYLEIHLFWAGKGT |
Full Sequence |
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Protein Sequence Length: 565 Download |
MVMLKIDQNY FTGPLPAFIG NMSALTELSI GINXFSGPIP KELGNLKELT LLAFGSNNFS 60 GTLPPELGNL VKLEXIYMDS CGLSGEIPST FAKLTNMQTL WASDSPFSGK IPDFIGNNWT 120 QLTSLRFQGN SFEGPIPTSF SQLTSLTSLR ISDIYNGSSS LDFIKNLKSL TELKLRNALI 180 TGTIPSDIGE YQSLQTLFLG NNSLSGPLPS QKSNQLXTID LSYNFLSGSF PQWVTTISQL 240 NLVVNNFTFD SSNITFWYYM KLTDGDFSIK CGGKQMTGSD GILYEAEDSA LGPATFSVTS 300 TEKWAVSNAG LFSDRKYPSF LVNTLAQVTG TDVTPELFQT SRVSPGSLRY YGLGLENGPY 360 TVTLHFAETV YENRTSQKWE SLGRRVFDIY IQGTRRTKDF DISKEAGGAK LGIMKRFNVS 420 VSENYLEIHL FWAGKGTCCI PEQGDYGPLI AAVHAASDFT PTVAGLPTTD PSEVRALNSI 480 FEQWDTQAMS GQWNISGEPC SGSAINGTDF ESPNDIPDIN PAIECDCTYN NGTTCHITKL 540 YVKLLSLDEQ DFHATADFSL ATYIC 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 9.0e-20 | 1 | 248 | 252 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 5.0e-24 | 3 | 247 | 252 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 2.0e-24 | 4 | 248 | 250 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 2.0e-29 | 4 | 232 | 231 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 1.0e-52 | 267 | 453 | 190 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002272404.1 | 0 | 1 | 473 | 85 | 591 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272404.1 | 4e-18 | 474 | 546 | 3 | 70 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303698.1 | 0 | 1 | 473 | 98 | 604 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303698.1 | 0.0000000001 | 25 | 248 | 74 | 301 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303698.1 | 1e-17 | 470 | 546 | 15 | 83 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 2e-22 | 4 | 243 | 271 | 516 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 1e-20 | 1 | 248 | 417 | 714 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 2e-16 | 4 | 158 | 396 | 550 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 2e-16 | 1 | 228 | 342 | 569 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 0.000000003 | 4 | 209 | 468 | 718 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO865700 | 209 | 265 | 473 | 0 |
DY633630 | 199 | 275 | 473 | 0 |
EY693687 | 257 | 15 | 247 | 0 |
EY693687 | 137 | 1 | 113 | 0.000003 |
EY693687 | 63 | 4 | 66 | 0.7 |
Sequence Alignments (This image is cropped. Click for full image.) |
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