Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000220329 |
Family | GH28 |
Protein Properties | Length: 361 Molecular Weight: 39297.8 Isoelectric Point: 6.5006 |
Chromosome | Chromosome/Scaffold: 020950238 Start: 10236 End: 13874 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 132 | 360 | 0 |
ACSSKEAVMVAPKKTXRIKPIRFSGPCKSQLTVQILGTLIASDDRSDFSKDGRHWLIFDSVSNLVVEGGGAINGNGKNWWQNSCKTDKSKPCKDAPTALT FYKSKNLMVRNLTIQDGQQIHVSFQKCMNVEVSNLSITAPPKSPNTDGIHVTDTQNILITSCVIATGDDCLSIVNGSKTVQASNITCGSGHGISIGSLGS GNSKAYVSHIAVNGAKLYGTTNGIRIKTW |
Full Sequence |
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Protein Sequence Length: 361 Download |
MALQKNELIL FFIITLPSFV LCYSSLHENQ LIDKYVDEAS EFDSKAYPSY FNTIDDGSNL 60 FKGLIKESAD VLCLKSFDKV DSSTSSSAET VSVNDFGAEG DGETDDTKNX SNNWSIFTYE 120 LFQAFEMAWK VACSSKEAVM VAPKKTXRIK PIRFSGPCKS QLTVQILGTL IASDDRSDFS 180 KDGRHWLIFD SVSNLVVEGG GAINGNGKNW WQNSCKTDKS KPCKDAPTAL TFYKSKNLMV 240 RNLTIQDGQQ IHVSFQKCMN VEVSNLSITA PPKSPNTDGI HVTDTQNILI TSCVIATGDD 300 CLSIVNGSKT VQASNITCGS GHGISIGSLG SGNSKAYVSH IAVNGAKLYG TTNGIRIKTW 360 Q |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-50 | 93 | 361 | 272 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 7.0e-56 | 93 | 361 | 273 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-68 | 133 | 361 | 230 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-81 | 93 | 361 | 273 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-94 | 93 | 361 | 273 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 1 | 361 | 1 | 345 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
EMBL | CAA54448.1 | 0 | 1 | 361 | 1 | 346 | polygalacturonase [Prunus persica] |
Swiss-Prot | P35336 | 0 | 1 | 361 | 1 | 345 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 18 | 361 | 5 | 332 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 23 | 361 | 32 | 362 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-16 | 191 | 359 | 107 | 283 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000002 | 200 | 359 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000002 | 200 | 359 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000002 | 200 | 359 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000002 | 200 | 359 | 77 | 233 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |