Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000221383 |
Family | GH28 |
Protein Properties | Length: 271 Molecular Weight: 28629.5 Isoelectric Point: 8.9429 |
Chromosome | Chromosome/Scaffold: 020452331 Start: 189 End: 2496 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 25 | 258 | 0 |
AVHSHLVSNGVIRGISSLNSKGVHLFITDSQNVRVRRVNISAPGTSPNTDGIHISNSNNVKVARTHIATGDDCIGMIQGSTNIAINNVICGPGHGISVGS LGKYEHENDVKGITVKKTTFLNTDNGIRIKSWPGSGPSLASGMVFKDLIMQNVRNPIIIDQEYCAGGCDKNQPSRVQISNVHYINIKGTTPSNVAVDFIC SSQVPCQNIQLHDIDLKYTGPNAAALTSVCKNVK |
Full Sequence |
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Protein Sequence Length: 271 Download |
MASLTDKDQV PGKSLVTAAV RATVAVHSHL VSNGVIRGIS SLNSKGVHLF ITDSQNVRVR 60 RVNISAPGTS PNTDGIHISN SNNVKVARTH IATGDDCIGM IQGSTNIAIN NVICGPGHGI 120 SVGSLGKYEH ENDVKGITVK KTTFLNTDNG IRIKSWPGSG PSLASGMVFK DLIMQNVRNP 180 IIIDQEYCAG GCDKNQPSRV QISNVHYINI KGTTPSNVAV DFICSSQVPC QNIQLHDIDL 240 KYTGPNAAAL TSVCKNVKAG FGGIQNPPAC H |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-56 | 35 | 270 | 238 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-56 | 35 | 241 | 207 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-63 | 29 | 270 | 245 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-68 | 29 | 260 | 232 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-90 | 33 | 271 | 241 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 31 | 243 | 623 | 836 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 31 | 263 | 185 | 419 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 31 | 271 | 185 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314372.1 | 0 | 21 | 271 | 163 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 31 | 271 | 176 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 5e-18 | 72 | 235 | 165 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1bhe_A | 2e-16 | 33 | 187 | 161 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-16 | 26 | 262 | 103 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-16 | 26 | 262 | 103 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-16 | 26 | 262 | 103 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN993443 | 174 | 98 | 271 | 0 |
JG075520 | 242 | 31 | 271 | 0 |
JG075143 | 244 | 29 | 271 | 0 |
GO991374 | 205 | 66 | 270 | 0 |
DT727533 | 246 | 31 | 270 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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