Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000223959 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 42230.5 Isoelectric Point: 8.0829 |
Chromosome | Chromosome/Scaffold: 022328121 Start: 11665 End: 12864 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 385 | 0 |
DACASPAPSKVVVPSGTYMLTEASFKGPCKAPIEIQVQGKLTAPADGGKLTRPDTWVGFDHVNKLTVSGGGTFDGQGALAWKKNDCNKNKDCKSIAINMR FNFVTNSTIQDITSLDSKNFHVNVLGCHNVTFXRVNVTAPXESINTDGIHIGRSTGINITDAHIGTGDDCVSIGDGNKEITVTRVTCGPGHGISVGSLGR YPNEEPVVGIRVKNCTLTNTSNGVRIKTWPASPSDGIASDMHFEDIIMVNVSNPVLIDQQYCPWNQCKQNVPSKVKISNVSFKNIKGSSATPLAVQIVCS GGIPCENVELADIDLTYNGNKGPLTSQCSNVKPT |
Full Sequence |
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Protein Sequence Length: 399 Download |
MARKLNILAA FLFLLSASKT QAEPGVFDVT SATYGAKPGS DITHALAKAW IDACASPAPS 60 KVVVPSGTYM LTEASFKGPC KAPIEIQVQG KLTAPADGGK LTRPDTWVGF DHVNKLTVSG 120 GGTFDGQGAL AWKKNDCNKN KDCKSIAINM RFNFVTNSTI QDITSLDSKN FHVNVLGCHN 180 VTFXRVNVTA PXESINTDGI HIGRSTGINI TDAHIGTGDD CVSIGDGNKE ITVTRVTCGP 240 GHGISVGSLG RYPNEEPVVG IRVKNCTLTN TSNGVRIKTW PASPSDGIAS DMHFEDIIMV 300 NVSNPVLIDQ QYCPWNQCKQ NVPSKVKISN VSFKNIKGSS ATPLAVQIVC SGGIPCENVE 360 LADIDLTYNG NKGPLTSQCS NVKPTITRVP NALACATSS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-69 | 40 | 383 | 349 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-81 | 34 | 370 | 344 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 4.0e-85 | 26 | 381 | 358 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-114 | 54 | 383 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-127 | 27 | 383 | 359 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABE77145.1 | 0 | 5 | 399 | 8 | 405 | putative polygalacturonase [Fragaria x ananassa] |
DDBJ | BAA89476.1 | 0 | 5 | 395 | 3 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 16 | 395 | 21 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 16 | 395 | 21 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 7 | 395 | 10 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |