Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000225538 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51737.9 Isoelectric Point: 6.3475 |
Chromosome | Chromosome/Scaffold: 019559200 Start: 2584 End: 5017 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 426 | 0 |
ASDGGAQLIVPPGRWLTGSFNLTSHFTLFLHKDAVILGTQDESEWPHLPVLPSYGRGRDAPGGRFSSLVFGTNLTDVVITGNNGTIDGQGASWWAKFKQG HLTLTRPYMIEIMYSNQIQISNLTLVNSPSWFVHPIYSSNITIQGLTILAPVDSPNTDGIDPDSCSQTRIEDCYIVSGDDCIAVKSGWDEYGIKVGIPTE HLVIRRLTCISPDSATIALGSEMSGGIRDVRAEDITAIDTQSSVRIKTAVGRGAYVKDIYVRRMTLKTMKYVFWMTGSYGSHPDPSFDPKALPEITNINY KQVVAENVTYSARLDGVPNDPFKGICISNVTITLTEKPKKLQWNCTNVEG |
Full Sequence |
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Protein Sequence Length: 475 Download |
MEASSKFHVA SAIIVALGFF FLTAAECRKP VSGTIEYSAI NCRKHSALLT DFGAVGDGKT 60 SNTKAFKAAV GHLSQLASDG GAQLIVPPGR WLTGSFNLTS HFTLFLHKDA VILGTQDESE 120 WPHLPVLPSY GRGRDAPGGR FSSLVFGTNL TDVVITGNNG TIDGQGASWW AKFKQGHLTL 180 TRPYMIEIMY SNQIQISNLT LVNSPSWFVH PIYSSNITIQ GLTILAPVDS PNTDGIDPDS 240 CSQTRIEDCY IVSGDDCIAV KSGWDEYGIK VGIPTEHLVI RRLTCISPDS ATIALGSEMS 300 GGIRDVRAED ITAIDTQSSV RIKTAVGRGA YVKDIYVRRM TLKTMKYVFW MTGSYGSHPD 360 PSFDPKALPE ITNINYKQVV AENVTYSARL DGVPNDPFKG ICISNVTITL TEKPKKLQWN 420 CTNVEGITSN VTPKACDLLP EKKEVVDCAF PEDRLAIEDV ELVTCSASTP FFRGY 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 0.007 | 217 | 416 | 244 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-22 | 28 | 408 | 399 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 6.0e-26 | 49 | 433 | 401 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-27 | 147 | 436 | 296 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-53 | 49 | 343 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 14 | 472 | 19 | 477 | unknown [Glycine max] |
RefSeq | XP_002273143.1 | 0 | 13 | 466 | 4 | 457 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 17 | 469 | 2 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 28 | 472 | 34 | 480 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 13 | 469 | 18 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 49 | 430 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 49 | 430 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 49 | 430 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 49 | 430 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 91 | 382 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |