y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000229391 |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 50943.8 Isoelectric Point: 7.1252 |
Chromosome | Chromosome/Scaffold: 02376125 Start: 4492 End: 6335 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 435 | 0 |
TACQSDESXARILVPQGFSFMIQSTIFTGPCLGGLVLQVDGTLXPPDGPGSWPKHISRHQWLVFNRINEMSLQGGGVIDGRGEKWWNLPCKPHRGINGTT LPGPCDSPIAIRFFMSSNLTVQGLXIXXTPNSTSXYSCRNVHIESISISSPAKSPNTDGIHIEKTYDVQIYNSVISNGDDCVSIGSGCYDVNIRNLTCGP GHGISIGSLGNHNSRACVSNITVRDSIMKGTDNGVRIKTWQGGSGSVSGVTFSNIHMDNVKNPIMIDQYYCPTKRCTNQTSAVFVSDILYSNIKGTYDVX SSPMHFACSDALPCTNLTLSEVELLPAVRYKVSDPYCWNA |
Full Sequence |
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Protein Sequence Length: 466 Download |
MKNCKFSLLV FCISFFCFLL VPNQACRWHN HTKQKYSHKQ SHISPPPCSL PDPTTPPEEP 60 PTKPYHSSGI FDVRSFGAVG DGQTDDTVAF KMAWDTACQS DESXARILVP QGFSFMIQST 120 IFTGPCLGGL VLQVDGTLXP PDGPGSWPKH ISRHQWLVFN RINEMSLQGG GVIDGRGEKW 180 WNLPCKPHRG INGTTLPGPC DSPIAIRFFM SSNLTVQGLX IXXTPNSTSX YSCRNVHIES 240 ISISSPAKSP NTDGIHIEKT YDVQIYNSVI SNGDDCVSIG SGCYDVNIRN LTCGPGHGIS 300 IGSLGNHNSR ACVSNITVRD SIMKGTDNGV RIKTWQGGSG SVSGVTFSNI HMDNVKNPIM 360 IDQYYCPTKR CTNQTSAVFV SDILYSNIKG TYDVXSSPMH FACSDALPCT NLTLSEVELL 420 PAVRYKVSDP YCWNAYGELL TGTIPPXSCL LDGVPRSLLG HEIERC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-73 | 65 | 450 | 393 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-82 | 65 | 446 | 392 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 100 | 419 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 8.0e-94 | 73 | 419 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-109 | 67 | 452 | 389 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 65 | 466 | 83 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 65 | 466 | 64 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 1 | 466 | 1 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 66 | 466 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 66 | 466 | 137 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-27 | 165 | 419 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-27 | 165 | 419 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-27 | 165 | 419 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-27 | 165 | 419 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-27 | 165 | 419 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |