Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000232225 |
Family | PL1 |
Protein Properties | Length: 509 Molecular Weight: 56148.4 Isoelectric Point: 7.2865 |
Chromosome | Chromosome/Scaffold: 020388298 Start: 11002 End: 13425 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 130 | 337 | 0 |
AVIQTEPLWIIFSADMTIKLKCELIVNSFKTIDGRGYSVHVTGGGCITLQYVSNIIIHNIHVHHCKPAGNTNVASSPTHVGWRGESDGDGISLFSAHKIW IDHCSLSFCADGLIDAIMGSTGITISNNYFAHHDEVMLLGHNDKYLPDSGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSANPTIN SQGNRYTA |
Full Sequence |
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Protein Sequence Length: 509 Download |
MLLPTTCILL ICFFLSPXXK ASYSFNLSLP HQHPDPDAVA HEVQRRVNAS VSRRQMLSID 60 VKDQSQCLVG NPIDDCWRCE DWSNNRQKLA DCGIGFGMDA MGGKGGLIYI VTDSSDSNPA 120 DPTPGTLRHA VIQTEPLWII FSADMTIKLK CELIVNSFKT IDGRGYSVHV TGGGCITLQY 180 VSNIIIHNIH VHHCKPAGNT NVASSPTHVG WRGESDGDGI SLFSAHKIWI DHCSLSFCAD 240 GLIDAIMGST GITISNNYFA HHDEVMLLGH NDKYLPDSGM QVTIAFNHFG VALVQRMPRC 300 RRGYIHVVNN DFTRWEMYAI GGSANPTINS QGNRYTAPQD TNAKEFWVRG KIEKWYLGAS 360 HLHGGAWVGV LARFQVALVV TLKLTCQSGK WLYGEIHYPT CIGGACTRQS RAVTKRVDTN 420 EGDWSDWNWR TEGDIMVNGA FFVPSGAGMS AQYAKASSIE PKSVTLIEQI TANAGVFGDP 480 RYAKLLQHPS LLYFLNCITC RINCHSEGI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 9.0e-22 | 150 | 333 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-58 | 152 | 335 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 144 | 338 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001147972.1 | 0 | 34 | 481 | 34 | 418 | pectate lyase 12 [Zea mays] |
RefSeq | XP_002268818.1 | 0 | 2 | 354 | 1 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002268818.1 | 7e-24 | 409 | 481 | 344 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 349 | 1 | 350 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002316399.1 | 2e-30 | 410 | 481 | 344 | 415 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 71 | 349 | 2 | 282 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 71 | 349 | 2 | 282 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-17 | 139 | 335 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |