Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000235201 |
Family | GH28 |
Protein Properties | Length: 600 Molecular Weight: 66168.5 Isoelectric Point: 8.2749 |
Chromosome | Chromosome/Scaffold: 000193323 Start: 462 End: 5484 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 270 | 591 | 0 |
TDACASPTASKVVVPSRTYKLTKASFKGPCKAPIEIQVQGELQAPVDGGKLTKPDTWVALEHINMLTISGSGTFDGQGALAWKLNDCNKNKDCKSIAINM RFNFVFNSTMQDITSLDSKNFPVNILGCHDVTFQHVNVTTPEESINTDGIHIGRSPGINIIDAHIGTGDDCVSIGDGSKEITVTKVTYGPGHGISVGSLG RYPNEEPVVGIRVRNCTLTNTSNGVRIKTWHASLSDGIASDMHFEDITVVNISNPIIIDQQYFPWNQCKRNIRSKVKISNVNFKNIKGSSVTPLAVQIVC SRGLLCENVELSNIDFTYNGNK |
Full Sequence |
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Protein Sequence Length: 600 Download |
MPRALVAPDT NHPTGTVGHQ HRNMSVLQQH IAFFDQDDNG IVYPWETFTG KSCWLQRCRA 60 IGFNPIVAVF MSVLINGAMS YPTLPGWIPS PFFPIYIYNI HKAKHGSDSG TYDTEGRYSP 120 ANIENMFSKY AHTVPDKFTL GELWAMTEGN RVAFDFFGWI TSKLEWGLLY VLARDEEGLL 180 SKEAVRRCFD GSLFDYCAKM NTVGRAKMGK KSFQRDALAQ ETCRRPLKTR INVLSRLTAK 240 AELSVFDVTS AIYGAKPGSD ITQALTKAWT DACASPTASK VVVPSRTYKL TKASFKGPCK 300 APIEIQVQGE LQAPVDGGKL TKPDTWVALE HINMLTISGS GTFDGQGALA WKLNDCNKNK 360 DCKSIAINMR FNFVFNSTMQ DITSLDSKNF PVNILGCHDV TFQHVNVTTP EESINTDGIH 420 IGRSPGINII DAHIGTGDDC VSIGDGSKEI TVTKVTYGPG HGISVGSLGR YPNEEPVVGI 480 RVRNCTLTNT SNGVRIKTWH ASLSDGIASD MHFEDITVVN ISNPIIIDQQ YFPWNQCKRN 540 IRSKVKISNV NFKNIKGSSV TPLAVQIVCS RGLLCENVEL SNIDFTYNGN KALLPLNVLM 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-69 | 253 | 589 | 350 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 8.0e-71 | 245 | 588 | 346 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-105 | 273 | 594 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-106 | 246 | 592 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam05042 | Caleosin | 1.0e-110 | 19 | 199 | 181 | + Caleosin related protein. This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABE77145.1 | 0 | 246 | 593 | 34 | 381 | putative polygalacturonase [Fragaria x ananassa] |
GenBank | ABR26683.1 | 0 | 246 | 593 | 34 | 381 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89476.1 | 0 | 238 | 592 | 22 | 371 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 238 | 592 | 22 | 371 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 238 | 592 | 22 | 371 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000008 | 337 | 531 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.0000000000002 | 331 | 586 | 69 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000002 | 331 | 586 | 69 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000002 | 331 | 586 | 69 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000000002 | 331 | 586 | 69 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |