Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000236210 |
Family | PL1 |
Protein Properties | Length: 430 Molecular Weight: 47170.3 Isoelectric Point: 6.9373 |
Chromosome | Chromosome/Scaffold: 002114384 Start: 5050 End: 7579 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 131 | 338 | 0 |
AVIQTEPLWIIFSADMTIKLKYELIVNSFKTIDGRGVNVHVTGGGCITLQYVSNIIIHNIHVHHCKPAGNTNIASSPTHVGWRGKSDGDGISLFGARKIW IDHCSLSFCADGLIDAIMGSTGITISNNYFAHHDEVMLLGHDDKYXPDSGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSGNPTIN SQGNRYTA |
Full Sequence |
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Protein Sequence Length: 430 Download |
MLLPTTCILL ICFSLSLLSK ASSSSLNLTL PHQHPDPDAV VYEVQRRVNA SVSRRQMLSI 60 DVKDQSKCLS GNPIDDCWRC EDWSNNRQRL ADCGIGFGMD ALGGKGGLIY IVTDSSDSNP 120 ANPTPGTLRH AVIQTEPLWI IFSADMTIKL KYELIVNSFK TIDGRGVNVH VTGGGCITLQ 180 YVSNIIIHNI HVHHCKPAGN TNIASSPTHV GWRGKSDGDG ISLFGARKIW IDHCSLSFCA 240 DGLIDAIMGS TGITISNNYF AHHDEVMLLG HDDKYXPDSG MQVTIAFNHF GVALVQRMPR 300 CRRGYIHVVN NDFTRWEMYA IGGSGNPTIN SQGNRYTAPQ DQNAKEVTKR VDTNEGDWSD 360 WNWRTEGDIM VNGAFFVPSG AGMSTQYAKA SSIEPKSVAL IERITANAGV FGDPRVFVWV 420 HVIMMGPLGI |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-21 | 103 | 334 | 250 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-58 | 151 | 336 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 145 | 339 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_196051.2 | 0 | 2 | 414 | 11 | 438 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 2 | 415 | 1 | 416 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 1 | 415 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519460.1 | 0 | 27 | 412 | 25 | 411 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002534016.1 | 0 | 1 | 415 | 2 | 416 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 410 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 102 | 336 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000002 | 149 | 409 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000002 | 149 | 409 | 78 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |