| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000236404 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 50769.9 Isoelectric Point: 8.2428 |
| Chromosome | Chromosome/Scaffold: 002472451 Start: 19454 End: 22612 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 84 | 424 | 0 |
| IACSIPARTRILIPAGSTYLVHPVDIAGPCRSRVTLMISGTVIAPEDPDAWIGLNRRKWLYFHGVNHLTIEGGGTINGMGQEWWARSCKTNSSNPCRHAP TAVTFHKCKNLKVKNLLIVNSQQMHMAFTSCMRVVASNLKVIAPAVSPNTDGIHISASKGVKVKDTIIRTDSYILNPGDDCISIVSNSSRIRIINIACGP GHGISIGSLGKSNSWSQVRNVVVDTAFLSNTDNGVRIKTWQGGSGFASNIAFRNVMMENVSNPIIIDQYYCDSRLPCLNQTSAVKVENISFVHIKGTSAT EEAIKFVCSDDSPCEGLYMEDIQLLPCVGEITTSLCWEAQG | |||
| Full Sequence |
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| Protein Sequence Length: 469 Download |
| MSSLRSSPTA SKPIIYGVIH TLFLLASSNT AYGETFDSVL QLLPQPGWTR IRPGSKRVLS 60 VGEFGAKGDG VTDDSQAFKN AWEIACSIPA RTRILIPAGS TYLVHPVDIA GPCRSRVTLM 120 ISGTVIAPED PDAWIGLNRR KWLYFHGVNH LTIEGGGTIN GMGQEWWARS CKTNSSNPCR 180 HAPTAVTFHK CKNLKVKNLL IVNSQQMHMA FTSCMRVVAS NLKVIAPAVS PNTDGIHISA 240 SKGVKVKDTI IRTDSYILNP GDDCISIVSN SSRIRIINIA CGPGHGISIG SLGKSNSWSQ 300 VRNVVVDTAF LSNTDNGVRI KTWQGGSGFA SNIAFRNVMM ENVSNPIIID QYYCDSRLPC 360 LNQTSAVKVE NISFVHIKGT SATEEAIKFV CSDDSPCEGL YMEDIQLLPC VGEITTSLCW 420 EAQGSSLGLV DPPACFSCSE SFITQKVPSY STIHSQRLGS SEYGRTATQ |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02188 | PLN02188 | 6.0e-88 | 42 | 435 | 397 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 3.0e-90 | 58 | 437 | 381 | + polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 3.0e-97 | 86 | 419 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02218 | PLN02218 | 4.0e-116 | 59 | 407 | 351 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 0 | 17 | 452 | 436 | + Probable polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28401.1 | 0 | 34 | 447 | 33 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABM67700.1 | 0 | 18 | 449 | 16 | 438 | polygalacturonase [Citrus sinensis] |
| RefSeq | NP_565232.1 | 0 | 30 | 449 | 25 | 437 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299601.1 | 0 | 34 | 450 | 28 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 35 | 451 | 11 | 420 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-21 | 153 | 353 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 4e-19 | 150 | 400 | 70 | 324 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 1e-17 | 72 | 398 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-17 | 72 | 398 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-17 | 72 | 398 | 6 | 310 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR992729 | 173 | 1 | 173 | 0 |
| EY660204 | 247 | 18 | 264 | 0 |
| EY660853 | 247 | 18 | 264 | 0 |
| EC954904 | 295 | 34 | 328 | 0 |
| CO979919 | 268 | 190 | 455 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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