y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000240113 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 50842.8 Isoelectric Point: 6.5647 |
Chromosome | Chromosome/Scaffold: 010141204 Start: 9592 End: 11988 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 132 | 460 | 0 |
STTRGIATLVVPKSKTFLLNSVAFQGPCRSSNINFQIQGSIIAPNNIGAWKNKDKWIQFANVPGLMINGGGRIDGNGAGWWKLCGNKKSHCQRPTSLHIH KCDGFLLSRLTFLNSPKNHISINSCNGGRVFGLLISAPKESPNTDGIDISSSTKLTIHNSLIATGDDCIAINSGSSFIKINGVKCGPGHGISIGSLGQNG EHSAVEEIQVSNCSFRGTQNGMRIKTWEGGSGYARKITFEGITFTDIENPIIIDQHYFANPTSVMDINKCVQVSDVTFRNIAGSSGVSQAITLDCGQNCC TNIIMDNVNIRSGVPNKDVYAYCNNAQGT |
Full Sequence |
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Protein Sequence Length: 473 Download |
MHRKVAIFLF AIIVIANSPT SCIASRSLVL DGDDATPXSN TFYTSEYAPT DDDDDSQLKE 60 AFFPEAWGSR PMKTFDVGNN NAETQDDSHQ AFLEAMGAQE NTFNVIDYGA VGNGQADDSI 120 AFLKAWGALC VSTTRGIATL VVPKSKTFLL NSVAFQGPCR SSNINFQIQG SIIAPNNIGA 180 WKNKDKWIQF ANVPGLMING GGRIDGNGAG WWKLCGNKKS HCQRPTSLHI HKCDGFLLSR 240 LTFLNSPKNH ISINSCNGGR VFGLLISAPK ESPNTDGIDI SSSTKLTIHN SLIATGDDCI 300 AINSGSSFIK INGVKCGPGH GISIGSLGQN GEHSAVEEIQ VSNCSFRGTQ NGMRIKTWEG 360 GSGYARKITF EGITFTDIEN PIIIDQHYFA NPTSVMDINK CVQVSDVTFR NIAGSSGVSQ 420 AITLDCGQNC CTNIIMDNVN IRSGVPNKDV YAYCNNAQGT SSFSTPYVPC LSH 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-80 | 130 | 457 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-80 | 91 | 457 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-87 | 100 | 472 | 379 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-98 | 103 | 462 | 363 | + polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-102 | 101 | 472 | 378 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 102 | 473 | 29 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 100 | 471 | 20 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABD28723.1 | 0 | 102 | 471 | 15 | 390 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 96 | 472 | 20 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 97 | 472 | 22 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-24 | 198 | 443 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 8e-24 | 196 | 444 | 70 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 8e-24 | 196 | 444 | 70 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 8e-24 | 196 | 444 | 70 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 8e-24 | 196 | 444 | 70 | 322 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |