| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000244018 |
| Family | PL1 |
| Protein Properties | Length: 437 Molecular Weight: 48732.9 Isoelectric Point: 10.1333 |
| Chromosome | Chromosome/Scaffold: 018186206 Start: 15833 End: 21896 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 156 | 357 | 0 |
| KKWITFRRDMRIQLQKPLLISSFTAIDGRGATVHIAGNACLVVFKASDVIIHGLRIHHCRSQPASSVMGPDGKIRQLGQVDGDAIRLVTASKVWIDHNTL YECQDGLLDVTRGSSLITISNNWFRDQDKVMLLGHDDGYVRDRNMRITVLYNHFGPNCNQRMPRIRYGYAHVVNNLYREWSQYAIGGSMNPSVKSEANLF IA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 437 Download |
| MLMALLILPL ALPLALPLAL QAMHCNHAVA KANGPNXLQL FLEMASHPGN LNANMRCLFL 60 GLFIVIIVGF APNPILAKKT KVDGMKLNVI DSCWRWNSNW RSNRQELASC SVGFAGKMSN 120 NAGSDVKYYQ VTDPSDNALD PTPGTLRYGV TMIRGKKWIT FRRDMRIQLQ KPLLISSFTA 180 IDGRGATVHI AGNACLVVFK ASDVIIHGLR IHHCRSQPAS SVMGPDGKIR QLGQVDGDAI 240 RLVTASKVWI DHNTLYECQD GLLDVTRGSS LITISNNWFR DQDKVMLLGH DDGYVRDRNM 300 RITVLYNHFG PNCNQRMPRI RYGYAHVVNN LYREWSQYAI GGSMNPSVKS EANLFIAPKS 360 LNNKEITWRK DSIGNKNSWI FYSVRDIFEN GASFVQSGTG GAKPHYNREQ TFRVVDAKSV 420 RSLTRSSGAL TCIKSRC |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-24 | 175 | 355 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-53 | 177 | 355 | 188 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-61 | 164 | 359 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 118 | 437 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 87 | 437 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 87 | 435 | 1 | 351 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 87 | 437 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 64 | 359 | 13 | 301 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 88 | 431 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 88 | 431 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-16 | 163 | 355 | 112 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 4e-16 | 151 | 357 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.000000000000005 | 201 | 355 | 102 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
