| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000246436 |
| Family | GH28 |
| Protein Properties | Length: 322 Molecular Weight: 34066.7 Isoelectric Point: 8.4093 |
| Chromosome | Chromosome/Scaffold: 02737537 Start: 10477 End: 13403 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 171 | 310 | 6.5e-34 |
| RVDQVTPLGCGNCSIGSLGKDLEEEGVQNVTVKDAIFKGGQNGLRIKSWARPSHGFVQGVQFLDVVMANVQNPIVXDQITTHTTXTALVLGVKVSXVSAT EIAINLDCSAANPCSGITLENVSLTCKKQVAQSYCSNAIG | |||
| Full Sequence |
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| Protein Sequence Length: 322 Download |
| MHGVQLVPXR ISVRLGYQRG GGNYKSPGIT LRIDGTVVAS SDYRILGQAD TWLSFETITG 60 VSIIGGALNA KXTSLWACKL XGSTDCPSGS TSLSFTNSKN IRIXGLMSLN SQMFDIVING 120 CQXVXPIAPT LMASMFNGQE MLQSSTPPSK REMTASQLAP APKTYGSSTY RVDQVTPLGC 180 GNCSIGSLGK DLEEEGVQNV TVKDAIFKGG QNGLRIKSWA RPSHGFVQGV QFLDVVMANV 240 QNPIVXDQIT THTTXTALVL GVKVSXVSAT EIAINLDCSA ANPCSGITLE NVSLTCKKQV 300 AQSYCSNAIG KTSGLVHPTS CL |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-24 | 29 | 318 | 312 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 9.0e-26 | 3 | 322 | 344 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 8.0e-26 | 35 | 321 | 309 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 5.0e-30 | 21 | 322 | 324 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-60 | 21 | 322 | 323 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI23356.1 | 0 | 26 | 322 | 78 | 390 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262690.1 | 0 | 29 | 322 | 91 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002275367.1 | 0 | 8 | 322 | 69 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 21 | 322 | 83 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 15 | 322 | 67 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000004 | 178 | 249 | 247 | 313 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| JZ191937 | 303 | 37 | 322 | 0 |
| JZ194028 | 296 | 27 | 305 | 0 |
| JZ192826 | 290 | 35 | 307 | 0 |
| JZ195837 | 277 | 32 | 291 | 0 |
| JZ192324 | 279 | 38 | 299 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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