Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000247298 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 42410 Isoelectric Point: 8.0824 |
Chromosome | Chromosome/Scaffold: 000193346 Start: 14929 End: 16128 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 385 | 0 |
TDACASPTTSKVVVPSGTYKLTEASFKGPCKAPIEIQVQGKLQAPADGGKLTKPDTWVAFEHINMLTIXGGGTFDGQGALAWKLNDCNKNKDCKSIAINM RFNFVTNSTIQDITSLDSKNFHVNILGCHNVTFQHVNVTAPGESINTDGIHIGRSTGINITDAHIGTGDDCVSIGDGSKEITVTRVTCGPGHGISVGSLG RYPNEEPVVGIKVRNCTLTNTSNGVRIKTWPASPSDGIASDMHFEDIIVVNVSNPILIDQQYCPWNQCKQNIPSKVKISNVSFKNIKGSSATPFAIQIIC SKGLPCENVELSDIDLTYSGNKGTLNSQCSNVKPT |
Full Sequence |
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Protein Sequence Length: 399 Download |
MARKLNALAV FLFLLSTSNA KAELGVFDVT SATYGAKPGS DITQPLAKAW TDACASPTTS 60 KVVVPSGTYK LTEASFKGPC KAPIEIQVQG KLQAPADGGK LTKPDTWVAF EHINMLTIXG 120 GGTFDGQGAL AWKLNDCNKN KDCKSIAINM RFNFVTNSTI QDITSLDSKN FHVNILGCHN 180 VTFQHVNVTA PGESINTDGI HIGRSTGINI TDAHIGTGDD CVSIGDGSKE ITVTRVTCGP 240 GHGISVGSLG RYPNEEPVVG IKVRNCTLTN TSNGVRIKTW PASPSDGIAS DMHFEDIIVV 300 NVSNPILIDQ QYCPWNQCKQ NIPSKVKISN VSFKNIKGSS ATPFAIQIIC SKGLPCENVE 360 LSDIDLTYSG NKGTLNSQCS NVKPTITRVL KALACATSS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-70 | 40 | 383 | 349 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-82 | 34 | 379 | 352 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-85 | 26 | 395 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-114 | 54 | 383 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-125 | 2 | 383 | 393 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP37458.1 | 0 | 8 | 399 | 8 | 405 | polygalacturonase [Fragaria x ananassa] |
GenBank | ABE77145.1 | 0 | 8 | 399 | 8 | 405 | putative polygalacturonase [Fragaria x ananassa] |
GenBank | ABR26683.1 | 0 | 8 | 399 | 8 | 405 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89476.1 | 0 | 1 | 395 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 1 | 395 | 1 | 393 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-17 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |