Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000247300 |
Family | GH28 |
Protein Properties | Length: 359 Molecular Weight: 39183.7 Isoelectric Point: 8.7794 |
Chromosome | Chromosome/Scaffold: 000193346 Start: 24799 End: 29465 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 173 | 350 | 0 |
INTDGIHIGRSPGINIIDAHIGTGDDCVSIGDGSKEITVTKVTYGPGHGISVGSLGRYPNEEPVVGIRVRNCTLTNTSNGVRIKTWHASLSDGIASDMHF EDITVVNISNPIIIDQQYFPWNQCKRNIRSKVKISNVNFKNIKGSSVTPLAVQIVCSRGLLCENVELSNIDFTYNGNK |
Full Sequence |
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Protein Sequence Length: 359 Download |
MEEALNYAQR ERNWVVRNLL NTAFEPICNI NNRKKSFQRD ALAQETCRRP LKTRINVLSR 60 LTAKAELSVF DVTSAIYGAK PGSDITQALT KAWTDACASP TASKVVVPSR TYKLTKASFK 120 GPCKAPIEIQ VQGELQAPVD GGKLTKPDTW VALEHINMLT ISGSGTFDGQ ESINTDGIHI 180 GRSPGINIID AHIGTGDDCV SIGDGSKEIT VTKVTYGPGH GISVGSLGRY PNEEPVVGIR 240 VRNCTLTNTS NGVRIKTWHA SLSDGIASDM HFEDITVVNI SNPIIIDQQY FPWNQCKRNI 300 RSKVKISNVN FKNIKGSSVT PLAVQIVCSR GLLCENVELS NIDFTYNGNK ALLPLNVLM 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 8.0e-45 | 151 | 348 | 199 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 2.0e-48 | 83 | 351 | 325 | + polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-55 | 69 | 347 | 344 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-69 | 97 | 353 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-78 | 70 | 351 | 350 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP37458.1 | 0 | 70 | 352 | 34 | 381 | polygalacturonase [Fragaria x ananassa] |
GenBank | ABE77145.1 | 0 | 70 | 352 | 34 | 381 | putative polygalacturonase [Fragaria x ananassa] |
GenBank | ABR26683.1 | 0 | 70 | 352 | 34 | 381 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89478.1 | 0 | 62 | 351 | 22 | 371 | polygalacturonase [Salix gilgiana] |
EMBL | CBI22049.1 | 0 | 69 | 351 | 27 | 312 | unnamed protein product [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.000000000001 | 174 | 345 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000001 | 174 | 345 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000001 | 174 | 345 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000001 | 174 | 345 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.000000000001 | 174 | 345 | 153 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN496790 | 182 | 170 | 351 | 0 |
CO417950 | 167 | 185 | 351 | 0 |
EC935564 | 179 | 170 | 348 | 0 |
EC947475 | 179 | 170 | 348 | 0 |
EC939231 | 179 | 170 | 348 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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