Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000247672 |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 48562.4 Isoelectric Point: 9.4136 |
Chromosome | Chromosome/Scaffold: 002624193 Start: 4885 End: 10607 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 176 | 404 | 0 |
QALRFYSGFDVTVRDIKILNSPQCHLKFDNSASIKVDNITITSPENSPNTDGIHLQNTKNVEIQHSTIGCGDDCVSIQTGCDNVHVHHIKCGPGHGISLG GLGGNQSTACVSNIIVNDISFNNTQLGVRIKTWPGGRGSVKNVSFSNIEVSNVGKPIVIDQNYCDNKLKKIMSKKNHRGAVAISGVKYERITGNYTQQPI LLNCSSDTPCTDVDIIDIQLKPISEKLSS |
Full Sequence |
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Protein Sequence Length: 452 Download |
MSFKQFTSLS LVFLALASFL SGEAHGAVGN LCAGADYARA ARGRKKNRKE KEKEKARSLI 60 TPLSKKSVVS IDARTHHNKK SKPHNEHHEG KGGSHKSHFP GPAPAPLPPS GSRTTFPVLS 120 FGAKGDGVSD DSKALLAAWK AACRVKGATV EIPSGFKFLV HPITLEGACM PDLVLQALRF 180 YSGFDVTVRD IKILNSPQCH LKFDNSASIK VDNITITSPE NSPNTDGIHL QNTKNVEIQH 240 STIGCGDDCV SIQTGCDNVH VHHIKCGPGH GISLGGLGGN QSTACVSNII VNDISFNNTQ 300 LGVRIKTWPG GRGSVKNVSF SNIEVSNVGK PIVIDQNYCD NKLKKIMSKK NHRGAVAISG 360 VKYERITGNY TQQPILLNCS SDTPCTDVDI IDIQLKPISE KLSSSPGLDW CQNSYGKTKA 420 PLVPSSIDYC LGRDGSPLLK NIAKSHEKNI IC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-44 | 114 | 396 | 349 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-44 | 114 | 417 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-50 | 177 | 395 | 220 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-51 | 116 | 446 | 397 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 9.0e-52 | 116 | 395 | 332 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 72 | 448 | 29 | 466 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 72 | 452 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 74 | 450 | 31 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 116 | 431 | 1 | 371 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 45 | 447 | 2 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-22 | 185 | 338 | 161 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000000000002 | 111 | 417 | 16 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.00000000000007 | 179 | 396 | 105 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.00000000000007 | 179 | 396 | 105 | 322 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.00000000000007 | 179 | 396 | 105 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |