| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000248311 |
| Family | GH28 |
| Protein Properties | Length: 479 Molecular Weight: 52968.7 Isoelectric Point: 6.3065 |
| Chromosome | Chromosome/Scaffold: 002746203 Start: 4025 End: 6975 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 74 | 404 | 0 |
| DSCPSPSPCRVIFPAGLIYLTATIRLKSGVVLDIQEGATLLGGTRLEDYPKEQSKWYVVLAENAINVGISGGGVVDGQGLKFVMXFDERKNVMVSWNRTG ACLGDECRPRLVGFINCRNVNLSNFKLRQPAYWCLHIVQCENISIEDVSIYGDFNTPNNDGIDIEDSNNTVITRCHINTGDDAICPKTYTGPLYNLTVTN CWIRTKSSAIKLGSASWFDFKGLVFDNITIVDSHRGLGLQIRDGGNVSDITFSNINMITRYYDQSWWGRAEPIYVTXCPRHSKSKEGSISNLLFVNITST SENGVFLSGSKGGLLSDLRFINLDLTYRRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 479 Download |
| MAIAPPPPPP LLIQSLTLPL LFLLFLLPPL QSHFATSPTI ELPNNPTTTI SVVDFGAVGD 60 GLRYDTIAIQ SAIDSCPSPS PCRVIFPAGL IYLTATIRLK SGVVLDIQEG ATLLGGTRLE 120 DYPKEQSKWY VVLAENAINV GISGGGVVDG QGLKFVMXFD ERKNVMVSWN RTGACLGDEC 180 RPRLVGFINC RNVNLSNFKL RQPAYWCLHI VQCENISIED VSIYGDFNTP NNDGIDIEDS 240 NNTVITRCHI NTGDDAICPK TYTGPLYNLT VTNCWIRTKS SAIKLGSASW FDFKGLVFDN 300 ITIVDSHRGL GLQIRDGGNV SDITFSNINM ITRYYDQSWW GRAEPIYVTX CPRHSKSKEG 360 SISNLLFVNI TSTSENGVFL SGSKGGLLSD LRFINLDLTY RRWTNNAGGL VDYRPGCQGL 420 VKHIXAGIIM EHINGLVIDN VNMRWSDEPL RQWNDPLDFK SATVNNISLL NFHSGLYKQ 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-9 | 52 | 374 | 363 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-11 | 182 | 400 | 234 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-11 | 47 | 327 | 338 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-15 | 48 | 330 | 306 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 5.0e-45 | 46 | 330 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 30 | 479 | 15 | 473 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 30 | 479 | 15 | 473 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 18 | 475 | 8 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 18 | 475 | 8 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 40 | 479 | 3 | 444 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 3e-20 | 35 | 330 | 142 | 487 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 2uvf_A | 3e-20 | 35 | 330 | 142 | 487 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 2uve_B | 3e-20 | 35 | 330 | 142 | 487 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 3e-20 | 35 | 330 | 142 | 487 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 2e-18 | 43 | 325 | 21 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
