Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000249275 |
Family | GH28 |
Protein Properties | Length: 469 Molecular Weight: 51482.1 Isoelectric Point: 8.1699 |
Chromosome | Chromosome/Scaffold: 007709370 Start: 6430 End: 8870 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 97 | 431 | 0 |
GNTGGSQLNVPKGRWLTGSFNLTSNFTLFLEHGAVILGSQDPKQWPVIEPLPSYGRGRERLGGRHISLVHGDGLTNVVITGHNGTVDGQGKMWWELWWNR TLEHTRGHLLEIKNSRNILISNLTFRNSPFWTIHPVYCSNVVIKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIKMARPSS NIIIRRVNGTTPTCSGVGIGSEMSGGISNITIEDLHVWDSAAGVRIKSDKGRGGYIANVXISNLMMERVKIPIRFSRGANDHPDKGWDPKAVPHVKGIFI SNVLSLNSTKAPELKGIEGASFERICFKNVTVLGL |
Full Sequence |
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Protein Sequence Length: 469 Download |
MKPTWASLLL VLTIMVVFSY QNFSTMSRLP TWVGSIWPTG VSETRLDXPA RSCAGFFXDV 60 PKRKVVMSIE AFGGVGDGTT SNTEAFRRAI LHMQAFGNTG GSQLNVPKGR WLTGSFNLTS 120 NFTLFLEHGA VILGSQDPKQ WPVIEPLPSY GRGRERLGGR HISLVHGDGL TNVVITGHNG 180 TVDGQGKMWW ELWWNRTLEH TRGHLLEIKN SRNILISNLT FRNSPFWTIH PVYCSNVVIK 240 DMTILAPLNA PNTDGIDPDS STNVCIEDCY IESGDDLVAV KSGWDHYGIK MARPSSNIII 300 RRVNGTTPTC SGVGIGSEMS GGISNITIED LHVWDSAAGV RIKSDKGRGG YIANVXISNL 360 MMERVKIPIR FSRGANDHPD KGWDPKAVPH VKGIFISNVL SLNSTKAPEL KGIEGASFER 420 ICFKNVTVLG LAPSAVWRCE FVSGFADGVF PVPCPQMEDM GSFDSCMQR |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-22 | 72 | 369 | 320 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-26 | 56 | 395 | 359 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-26 | 67 | 399 | 353 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-30 | 159 | 369 | 219 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-58 | 1 | 411 | 450 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 29 | 458 | 32 | 457 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 29 | 469 | 43 | 479 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 29 | 469 | 43 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307030.1 | 0 | 67 | 458 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310517.1 | 0 | 39 | 466 | 11 | 434 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00004e-41 | 60 | 436 | 23 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00004e-41 | 60 | 436 | 23 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00004e-41 | 60 | 436 | 23 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00004e-41 | 60 | 436 | 23 | 418 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-23 | 111 | 369 | 52 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |