Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000249386 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51556.8 Isoelectric Point: 6.9129 |
Chromosome | Chromosome/Scaffold: 007566297 Start: 13541 End: 15382 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 95 | 442 | 0 |
TACQSDESAARILVPQGFSFXIQSTIFTGPCLGGLVLQVIFGTEKVDGTLVPPDGPESWPKNISRHQWLVFYRVNEMSLQGGGVIDGRGEKWWNLPCKPH RGINGTTLPGPCDSPIALRFFMSSNLTVQGLRIKNSPKFHFRFDNCKNVHIESISISAPAKSPNTDGIHIENTNDVQIYNSVISNGDDCISIGSGCYDVD IRNITCGPGHGISIGSLGNHNSRACVSNITVRDSIIKGTDNGVRIKTWQGGSGSVSAVTFSNIHMDNVRNPIMIDQYYCLTKGCTNQTSAVFVSDILYSN IKGTYDVRSSPMHFACSDALPCTNLTLSEVELLPAVGDKVSDPYCWNA |
Full Sequence |
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Protein Sequence Length: 473 Download |
MKNCKLSLLV FCISFFCFLL MSTQARXHNH TKHKHSHKQS NISQPPSSSP EPASPPEEPP 60 TNPHHSSGAF DVRSFGAVGD GQTDDTAAFK MAWDTACQSD ESAARILVPQ GFSFXIQSTI 120 FTGPCLGGLV LQVIFGTEKV DGTLVPPDGP ESWPKNISRH QWLVFYRVNE MSLQGGGVID 180 GRGEKWWNLP CKPHRGINGT TLPGPCDSPI ALRFFMSSNL TVQGLRIKNS PKFHFRFDNC 240 KNVHIESISI SAPAKSPNTD GIHIENTNDV QIYNSVISNG DDCISIGSGC YDVDIRNITC 300 GPGHGISIGS LGNHNSRACV SNITVRDSII KGTDNGVRIK TWQGGSGSVS AVTFSNIHMD 360 NVRNPIMIDQ YYCLTKGCTN QTSAVFVSDI LYSNIKGTYD VRSSPMHFAC SDALPCTNLT 420 LSEVELLPAV GDKVSDPYCW NAYGELQTLT IPPVSCLLDG VPRSLLDKYV ERC 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-81 | 69 | 457 | 394 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-90 | 70 | 453 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 99 | 426 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-103 | 72 | 426 | 358 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-121 | 70 | 453 | 386 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 64 | 473 | 83 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 64 | 473 | 64 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 7 | 473 | 6 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 65 | 473 | 38 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 1 | 473 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-27 | 171 | 436 | 72 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-27 | 171 | 436 | 72 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-27 | 171 | 436 | 72 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-27 | 171 | 436 | 72 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-27 | 171 | 436 | 72 | 325 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |