Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000251956 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 53165.1 Isoelectric Point: 7.7074 |
Chromosome | Chromosome/Scaffold: 015627214 Start: 7199 End: 10276 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 435 | 0 |
YETQGGAQLFVPAGKWLTGSFNLTSHFTLYLHKDAVLLASQDINEWPVLKALPSYGRGRDAAAGRYTSLIWGTNLTDVVVTGDNGTIDGQGEFWWQQFHK KKLKYTRPYLIEIMFSTDVQISNLTLLNSPSWNVHPVYSSNILVKGITIIAPISSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPT KQLVVRRLTCISPYSATIALGSEMSGGIQDVRAEDIVAIHTESGVRIKTAVGRGGYVKDIYARRFTMHTMKWAFWMTGNYGSHADDKYDKNALPEIKNIN YRDMVADNVTMAARLEGIADHPFTGICISNVTIGLAVKAKKQPWTCTDIEG |
Full Sequence |
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Protein Sequence Length: 483 Download |
MELLGRXPMK TQVIIKLVLV VLLVVAMLRG AESRRAKGKI FESFEYTAMN CRAHSASLTD 60 FGGVGDGKTS NTKAFHAAVS QLSQYETQGG AQLFVPAGKW LTGSFNLTSH FTLYLHKDAV 120 LLASQDINEW PVLKALPSYG RGRDAAAGRY TSLIWGTNLT DVVVTGDNGT IDGQGEFWWQ 180 QFHKKKLKYT RPYLIEIMFS TDVQISNLTL LNSPSWNVHP VYSSNILVKG ITIIAPISSP 240 NTDGINPDSC TNTRIEDCYI VSGDDCVAVK SGWDEYGIAF GMPTKQLVVR RLTCISPYSA 300 TIALGSEMSG GIQDVRAEDI VAIHTESGVR IKTAVGRGGY VKDIYARRFT MHTMKWAFWM 360 TGNYGSHADD KYDKNALPEI KNINYRDMVA DNVTMAARLE GIADHPFTGI CISNVTIGLA 420 VKAKKQPWTC TDIEGITSGV TPRPCDLLPD QGAEKAKXCD FPADDLPIDR VELKQCTYRM 480 SSX |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 8.0e-19 | 60 | 445 | 401 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-24 | 53 | 442 | 404 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-28 | 153 | 433 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-29 | 55 | 446 | 411 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 5.0e-59 | 56 | 351 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 37 | 478 | 44 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 15 | 478 | 1 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 37 | 478 | 32 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 28 | 481 | 17 | 468 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 480 | 1 | 469 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 54 | 417 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 54 | 417 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 54 | 417 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 54 | 417 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000009 | 100 | 391 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |