| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000256086 |
| Family | CBM20 |
| Protein Properties | Length: 950 Molecular Weight: 106127 Isoelectric Point: 6.1512 |
| Chromosome | Chromosome/Scaffold: 001255647 Start: 12073 End: 16660 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM20 | 759 | 844 | 4.2e-25 |
| VRVQFNLHKECKFGESFLLVGSEPIMGQWDPSNATPMNWSDGNIWNIELNVPTGIAIQYKFILKKDTGDVLWQPGPDRILHNWRTK | |||
| Full Sequence |
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| Protein Sequence Length: 950 Download |
| MATLSTPLIS LPRHPPNPPS PTATNELFSS CPPLSSIDHC TNIKQLKQVH AQMLRTGLLF 60 DPYSASKLIT VCALSSFSSL DYARQVFDQI PQPNLYSWNT LIRAYASSTD PTESILVFLE 120 MLYRCMESPN KFTYPFVIKA ASELRVLELG RGFHGMVIKA SLGSDVYILN SLVHFYGSCG 180 DLDLARRVFV KTPKKDVVSW NSMITAFAXG NCPEEALELF KEMEAKNVKP NDVTMVSVLS 240 ACAKKVDLEF GRWVCSRIER NEIGENLTLN NXMLDMYVKC GSIEEAKRLF DRMPEKDIVS 300 WTTILDGYAQ SGNYDEAWXI FXAMPSQDIA AWNVLISSYE QSGKPKEALA VFHDLQKRKS 360 PKPDEVTLVS TLAACAQLGA IDLGGWIHVY VKKQGMKMNC HLTTSLIDMY AKCGDLDKAL 420 EVFNSVERRD VFVWSAMIAA LAMHGKGREA LDCFSRMLET KVKPNSVTFT NMLCACSHAG 480 LVDEGRTFFY QMEPVYGVVP GVKHYACMVD ILGRSGNLEE ATELIEKMPI APTASVWGAL 540 LGACGLHGNV ELAEKACSHM LELDPGNHGA YVLLSNIYAK TGKWEEVSGL RQRMRDAGIK 600 KEPGCSAIEV NGIVHEFLVG DNSHPLCKEI YSKLDEIAGR LKSNGYVPNK SNLLQFVEEE 660 DMKNHALILH SEKLAIAFGL ISLSPSQPIQ VVKNLRVCGD CHAVAKLISR VYDREILLRD 720 RYRFHHFRDG HCSCFYDLRN SRNWGPTNSV CFSEQSETVR VQFNLHKECK FGESFLLVGS 780 EPIMGQWDPS NATPMNWSDG NIWNIELNVP TGIAIQYKFI LKKDTGDVLW QPGPDRILHN 840 WRTKNTISID EDWKDYELVD VDVGPIIPGN FTHPEDQELL LNTKGADFTD KPASADENPP 900 FNSNIEVIIE DKAIKSADGT LLGIKKEVRV VDNGNSXVKE ESIKKTXPTP |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03077 | PLN03077 | 3.0e-13 | 342 | 541 | 201 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 2.0e-34 | 214 | 556 | 346 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 2.0e-47 | 113 | 551 | 439 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 2.0e-76 | 77 | 486 | 411 | + Protein ECB2; Provisional | ||
| PLN03077 | PLN03077 | 0 | 47 | 734 | 694 | + Protein ECB2; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_180537.1 | 0 | 1 | 734 | 1 | 734 | pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] |
| RefSeq | XP_002279360.1 | 0 | 1 | 735 | 1 | 740 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314110.1 | 0 | 1 | 735 | 1 | 735 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525630.1 | 0 | 1 | 493 | 1 | 494 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| RefSeq | XP_002525630.1 | 0 | 315 | 946 | 82 | 717 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1kum_A | 0.000006 | 759 | 836 | 7 | 88 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1kul_A | 0.000006 | 759 | 836 | 7 | 88 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 1acz_A | 0.000006 | 759 | 836 | 7 | 88 | A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, 5 Structures |
| PDB | 1ac0_A | 0.000006 | 759 | 836 | 7 | 88 | A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With Cyclodextrin, Nmr, Minimized Average Structure |
| PDB | 1ukt_B | 0.0002 | 736 | 854 | 561 | 685 | A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin Glucanotransferase Compexed With An Acarbose |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| DY671221 | 273 | 22 | 293 | 0 |
| EL435498 | 260 | 267 | 526 | 0 |
| DY671221 | 296 | 131 | 423 | 1e-30 |
| EL435498 | 209 | 83 | 290 | 1e-25 |
| DY671221 | 262 | 273 | 528 | 8e-23 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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