Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000256522 |
Family | PL1 |
Protein Properties | Length: 614 Molecular Weight: 66417.4 Isoelectric Point: 4.4058 |
Chromosome | Chromosome/Scaffold: 002791491 Start: 8448 End: 13903 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 118 | 323 | 0 |
IQDEPLWIIFKRDMVVQLKQELVMNSFKTIDGXGASVHIAGGPCITIHYATNIIIHGIHIHDCKPAGNGNIRNSPEHSGWWTVSDGDGISIFNGQHIWVD HCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKXMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTILSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 614 Download |
MAQLSLLLTX FLITSLSATF VSSSQVQDPE RVVEEVHRSI NASRRNLAYL SCGTGNPIDD 60 CWRCDPNWER NRQRFADCAI GFGKDAIGGR NGRIYVVTDS GDDDPVNPKP GTLRHAVIQD 120 EPLWIIFKRD MVVQLKQELV MNSFKTIDGX GASVHIAGGP CITIHYATNI IIHGIHIHDC 180 KPAGNGNIRN SPEHSGWWTV SDGDGISIFN GQHIWVDHCS LSNCHDGLID AIHGSTAITI 240 SNNYMTHHDK VMLLGHSDSY TQDKXMQVTV AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH 300 WEMYAIGGSA SPTILSQGNR FLAPDRRFDK EVTKHEDAPE SEWRKWNWRS EGDMLLNGAF 360 FRQSGAGASS TYARASSLSA RPSSLAKKEA AASTTAPAVE AVEKKAGRAA VLEGASAGKG 420 VSAVTTSEGG SVVVSRVGEG GDAEAESSGE GAEALEESSE DGPELLSLSL SLSFDDLGEE 480 AGLLLLSSLS FEDLGELEEE DEDLGDGDEL SLPLSLPLSL LDLGELAEDL GDGDELSLSL 540 LLLGAGADDD LSLSDDLSSS DDLGDGADGL GADEDLLCPC PMICPCLMMI CPYLMMERRM 600 GKMKMNCQSL FYRL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.006 | 158 | 243 | 96 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 1.0e-30 | 143 | 321 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-75 | 136 | 321 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-81 | 130 | 325 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 22 | 386 | 16 | 380 | AF243475_1 pectate lyase [Vitis vinifera] |
RefSeq | XP_002268976.1 | 0 | 22 | 386 | 21 | 385 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 1 | 386 | 1 | 385 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318694.1 | 0 | 17 | 386 | 16 | 385 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 1 | 387 | 5 | 379 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 365 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 365 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-20 | 125 | 322 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 3e-17 | 169 | 321 | 115 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 3e-17 | 169 | 321 | 115 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |