y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000256989 |
Family | PL1 |
Protein Properties | Length: 436 Molecular Weight: 49931.8 Isoelectric Point: 6.9426 |
Chromosome | Chromosome/Scaffold: 005939172 Start: 451 End: 2476 |
Description | VPS54 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 263 | 338 | 7.7e-23 |
GHDEVMLLGHDDKYLPDSGMQVTIAFNHFSMALVQRMPRCRRGYIHVVNNNFTRWEMYAIGGSGNPTINSQGYHYI |
Full Sequence |
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Protein Sequence Length: 436 Download |
MLQPDEERSE IVDDVASDFI FDLPDESGDR KRYSLVCRRW LRIEGQNRHR LSLSAQSDLI 60 PLTSDRAMSM RFSLRVLLRR VSPPPPSPHL NSLISCLNRH SDSMTRSDFQ PYLASTGGQG 120 EALVACLREV PALYYKDSAP EDGATFRSTC PFTNVPENLV LQEKLSHYLD VVKLHLVKEI 180 SLRSNSFFDS QGQLQDLNVK IVEGCSRIQE LKDTILLMDV DLVDCARQIH DLNETRRNLL 240 ALQQKLRLIL YASGGAAEVM LLGHDEVMLL GHDDKYLPDS GMQVTIAFNH FSMALVQRMP 300 RCRRGYIHVV NNNFTRWEMY AIGGSGNPTI NSQGYHYIAP QDQNAKEVTK CVDTNEGDWS 360 DWNWRTERNG KDFRDNIQVI TKPAIRRLAR RGGVKRISEL IYEETKSFLN IFLENVIRDA 420 VTYTEHARRK TVTIMD 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00076 | H4 | 2.0e-28 | 368 | 436 | 69 | + Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution | ||
smart00656 | Amb_all | 1.0e-29 | 263 | 340 | 78 | + Amb_all domain. | ||
smart00417 | H4 | 5.0e-32 | 368 | 436 | 69 | + Histone H4. | ||
PTZ00015 | PTZ00015 | 3.0e-32 | 368 | 436 | 69 | + histone H4; Provisional | ||
PLN00035 | PLN00035 | 2.0e-34 | 366 | 436 | 71 | + histone H4; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0000786 | nucleosome |
GO:0003677 | DNA binding |
GO:0005634 | nucleus |
GO:0006334 | nucleosome assembly |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16926.1 | 0 | 104 | 262 | 97 | 279 | putative protein [Arabidopsis thaliana] |
EMBL | CAN79629.1 | 0 | 81 | 267 | 75 | 287 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_193684.3 | 0 | 104 | 262 | 97 | 279 | protein binding [Arabidopsis thaliana] |
RefSeq | XP_002272177.1 | 0 | 81 | 262 | 75 | 283 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002526977.1 | 0 | 101 | 262 | 88 | 276 | vacuolar protein sorting, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1aoi_F | 7e-30 | 367 | 436 | 1 | 70 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
PDB | 1aoi_B | 7e-30 | 367 | 436 | 1 | 70 | C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment |
PDB | 4h9s_D | 1e-29 | 371 | 436 | 1 | 66 | E Chain E, Complex Structure 6 Of DaxxH3.3(SUB7)H4 |
PDB | 4h9s_C | 1e-29 | 371 | 436 | 1 | 66 | E Chain E, Complex Structure 6 Of DaxxH3.3(SUB7)H4 |
PDB | 3kwq_F | 1e-29 | 371 | 436 | 1 | 66 | D Chain D, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EB140387 | 104 | 264 | 367 | 0 |
GO527798 | 104 | 264 | 367 | 0 |
CV151051 | 104 | 264 | 367 | 0 |
DY634909 | 104 | 264 | 367 | 0 |
CV880516 | 109 | 264 | 372 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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