Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000258005 |
Family | GH28 |
Protein Properties | Length: 198 Molecular Weight: 20979.7 Isoelectric Point: 7.6064 |
Chromosome | Chromosome/Scaffold: 007770304 Start: 4801 End: 5485 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 3 | 154 | 0 |
AGDDCVSIQTGCSNVYIHNVNCGPGHGVSIGGLGKDNTKACVSNVTVRDVKMHSTLTGVRIKTWQGGSGSVQNIMFSNIQLTEVETPIMIDQFYCDKSKC QNQSSAVAISGVNYVNIQGTYTSKAVHFACSDSSPCTGVSLDTIELKSVDEG |
Full Sequence |
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Protein Sequence Length: 198 Download |
MTAGDDCVSI QTGCSNVYIH NVNCGPGHGV SIGGLGKDNT KACVSNVTVR DVKMHSTLTG 60 VRIKTWQGGS GSVQNIMFSN IQLTEVETPI MIDQFYCDKS KCQNQSSAVA ISGVNYVNIQ 120 GTYTSKAVHF ACSDSSPCTG VSLDTIELKS VDEGKHLYDP FCWEAYGVLK TSTVPRIDCL 180 KKGKASTKAQ SGSSGSSC |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-39 | 4 | 155 | 154 | + polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-40 | 1 | 180 | 186 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-43 | 4 | 148 | 146 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-49 | 4 | 149 | 147 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-52 | 4 | 175 | 174 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD62085.1 | 0 | 1 | 185 | 154 | 338 | polygalacturonase precursor [Glycine max] |
DDBJ | BAH56488.1 | 0 | 4 | 196 | 314 | 509 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002276805.1 | 0 | 1 | 198 | 296 | 492 | PREDICTED: polygalacturonase [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 186 | 321 | 506 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521450.1 | 0 | 1 | 185 | 277 | 458 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.0000000000004 | 5 | 136 | 175 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000004 | 5 | 136 | 175 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000004 | 5 | 136 | 175 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000004 | 5 | 136 | 175 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.0000000000004 | 5 | 136 | 175 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DN909663 | 180 | 1 | 180 | 0 |
DN910073 | 177 | 4 | 180 | 0 |
CO104482 | 180 | 1 | 180 | 0 |
CV092485 | 180 | 1 | 180 | 0 |
EC934529 | 180 | 1 | 180 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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