Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000259719 |
Family | GT47 |
Protein Properties | Length: 806 Molecular Weight: 89887.9 Isoelectric Point: 8.5454 |
Chromosome | Chromosome/Scaffold: 011953180 Start: 21179 End: 29290 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 196 | 492 | 0 |
LKIYVYDDSEIDGLKALMRGRDGVIDSNACLKGQWGTQVKIHRLLLNSRFRTRKKEEADLFFVPTYTKCVRMMGGLNDKEINQTYVKVLSQMPYFRRSGG RDHIFVFSSGAGAHLFRSWATYINRSIILTPEGDRTDKKDTSAFNTWKDIIIPGNVEDGMTTNGATLVHPLPIPKRKYLANYLGRAQGKVGRLKLIELSR KFPDKLECPELKFSGPEKFGRIDYFEHLRDAKFCLAPRGESSWTLRFYEAFFVECVPVILSDQVELPFQNVVDYTQISIKWPSTRIGPELLQYLESI |
Full Sequence |
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Protein Sequence Length: 806 Download |
MIVRDDAETF VAAASKNFPD IYSALHAEAY LVARECLFWT MVRGFTNLQI EGDSLQIVGE 60 LSDSSSNWTG TGRGHVMLGH KTLTRSLLPQ KPSCRRTPLP SSTDDTLKMG SVNNKARPFS 120 TQHHQHPLCT RTHQIGALLL VAASFFLTSL LDRSFRPCAS HFAAVDIFPN SRSSVQVTGG 180 RDLLWPHRGY GPLLDLKIYV YDDSEIDGLK ALMRGRDGVI DSNACLKGQW GTQVKIHRLL 240 LNSRFRTRKK EEADLFFVPT YTKCVRMMGG LNDKEINQTY VKVLSQMPYF RRSGGRDHIF 300 VFSSGAGAHL FRSWATYINR SIILTPEGDR TDKKDTSAFN TWKDIIIPGN VEDGMTTNGA 360 TLVHPLPIPK RKYLANYLGR AQGKVGRLKL IELSRKFPDK LECPELKFSG PEKFGRIDYF 420 EHLRDAKFCL APRGESSWTL RFYEAFFVEC VPVILSDQVE LPFQNVVDYT QISIKWPSTR 480 IGPELLQYLE SIPDEYIEGM ISRGRQVRCL WVYASESGSC SAMHAILWEL QRKLSEKNLT 540 SLGPCALIEL IILFLNSASL KIERTVKRTL RTKRTKVGSS STESGLVDGE AENFSGILKR 600 RSVLLSAGAS LFSSQVLGFP REVLAVVKQG LLAGRIPGLS EPDEQGWRTY QRPDEKSGGH 660 GVGWSPIIPY RFSVPQDWEE VPVSIADLGG TEIDLRFGSP KEGRISVIVA PVLRFADNLD 720 GDATIEKIGR PETVINAFGP EVIGENVEGK VMSITVVQDS GRTYYQYELE PPHALITATA 780 AGNRLYLFSV TGSGTDTFST LTCFLL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01789 | PsbP | 2.0e-5 | 670 | 796 | 139 | + PsbP. This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. | ||
PLN00067 | PLN00067 | 2.0e-15 | 669 | 793 | 142 | + PsbP domain-containing protein 6; Provisional | ||
pfam03016 | Exostosin | 1.0e-43 | 196 | 492 | 312 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
PLN00066 | PLN00066 | 8.0e-113 | 579 | 794 | 217 | + PsbP domain-containing protein 4; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0005509 | calcium ion binding |
GO:0009523 | photosystem II |
GO:0009654 | oxygen evolving complex |
GO:0015979 | photosynthesis |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_564141.1 | 0 | 112 | 534 | 5 | 427 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002265632.1 | 0 | 109 | 534 | 1 | 424 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300942.1 | 0 | 109 | 536 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002307477.1 | 0 | 109 | 536 | 1 | 427 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526175.1 | 0 | 109 | 536 | 1 | 420 | catalytic, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE707914 | 279 | 236 | 514 | 0 |
CX668832 | 286 | 256 | 541 | 0 |
HO781282 | 326 | 128 | 453 | 0 |
BX841155 | 337 | 107 | 442 | 0 |
HO781282 | 48 | 445 | 492 | 1e-16 |
Sequence Alignments (This image is cropped. Click for full image.) |
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