y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000260203 |
Family | GH28 |
Protein Properties | Length: 407 Molecular Weight: 44693.5 Isoelectric Point: 8.8515 |
Chromosome | Chromosome/Scaffold: 016007398 Start: 489 End: 7382 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 129 | 396 | 0 |
ASPQGYLKATTDLRKYGSGGGWIEFAWMKGLTLTGGGTFDGRGAHAWPHNKCITNSNCKLLPTNLKFVALNKTVIRGLTSVNSKFFHIALVECHNFKGSR LKISAPETSPNTDGIHIERSSSVYFSSSRIATGKYPDERDVSGLVVKDCTMTGTTNGIRIKTWANSPGSSAATNMTFENIVMNNVTNPIIIDQSYCPFTA CTSKAPSRVKLSDIYFKNIRGTSSSEMAVLLECSKGIPCQNIFLEDVHLDLSSGEKXATSSCSNVKAK |
Full Sequence |
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Protein Sequence Length: 407 Download |
MAITKTTKPA NFGLLEGMVK EDKDKDDEAS DVLPKTYLTP FQDFESINNL SMENDSSFPS 60 VRALSAIKAE IARQEARLKI EKENLVKEKS FLMGTASNRD NQDGELEITV SGEKYRCLRH 120 SQRHGRRHAS PQGYLKATTD LRKYGSGGGW IEFAWMKGLT LTGGGTFDGR GAHAWPHNKC 180 ITNSNCKLLP TNLKFVALNK TVIRGLTSVN SKFFHIALVE CHNFKGSRLK ISAPETSPNT 240 DGIHIERSSS VYFSSSRIAT GKYPDERDVS GLVVKDCTMT GTTNGIRIKT WANSPGSSAA 300 TNMTFENIVM NNVTNPIIID QSYCPFTACT SKAPSRVKLS DIYFKNIRGT SSSEMAVLLE 360 CSKGIPCQNI FLEDVHLDLS SGEKXATSSC SNVKAKFIGT QIPPPCT 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-38 | 133 | 403 | 307 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-40 | 133 | 406 | 306 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-44 | 150 | 406 | 291 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-64 | 132 | 394 | 295 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-161 | 133 | 407 | 307 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 135 | 406 | 47 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 129 | 406 | 110 | 387 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 135 | 406 | 99 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 135 | 406 | 116 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 129 | 406 | 100 | 409 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000002 | 161 | 377 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00006 | 159 | 393 | 74 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00006 | 159 | 393 | 74 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00006 | 159 | 393 | 74 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.0006 | 159 | 393 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR944704 | 228 | 211 | 406 | 0 |
DR933566 | 209 | 201 | 377 | 0 |
FR598633 | 167 | 229 | 363 | 0 |
FR598633 | 49 | 359 | 407 | 0 |
FR598632 | 167 | 229 | 363 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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