Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000261959 |
Family | GH28 |
Protein Properties | Length: 629 Molecular Weight: 66169.7 Isoelectric Point: 4.9699 |
Chromosome | Chromosome/Scaffold: 018046125 Start: 12328 End: 18977 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 281 | 614 | 0 |
TDACASTSASKIVVPSGTYKFVGATFKGPCKAPIEFQLQGTLQAPEDGSQLPKADTWIGFERIDGLTLSGGGTFDGLGATAWKQNDCNKNKNCKSIAINL RFNFVTNSIIRDITTKDSKNFHVNLLGCNNVAFQHFTVSAPKESINTDGIHIGRSTGINITDTTIGTGDDCISIGDGTKQLHVTNVTCGPGHGISIGSLG KYENEEPVSGIFIKNCTITNTDNGVRIKTWPASPANGVVSDVHFEDIIMDNVKNPVIIDQEYCPYNQCTLQVPSKVKISNVSFKNIKGSSSTPVGIKLVC SGGLPCENVELSNIDLTYTGKEGSITSECKHIKP |
Full Sequence |
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Protein Sequence Length: 629 Download |
MISTSNLLDP PDKASSVPLF DISTLTITIN PQHCKHSSVQ QRNYGDARIQ RSKREADKSE 60 QGDEMGVNGT ARLNPDSLLH FSPLSLPAPT SSTPLAITRA ASPSSTSASS LPSSGSILTH 120 PLSNSPSRTS HGSRPDPTST SLPSSPDSLP SLSTTASPAD IRFGLNLKLL DDDIGFLSYS 180 GFESNKLLAS GVVVDEDGGD VEGVRSGLDP CEVLYGEFGG GGVGIEPEDG RQVEVEEDDA 240 ALAIASVSTS NAQSGVYDVT SANYGGKANS DITQALSKAW TDACASTSAS KIVVPSGTYK 300 FVGATFKGPC KAPIEFQLQG TLQAPEDGSQ LPKADTWIGF ERIDGLTLSG GGTFDGLGAT 360 AWKQNDCNKN KNCKSIAINL RFNFVTNSII RDITTKDSKN FHVNLLGCNN VAFQHFTVSA 420 PKESINTDGI HIGRSTGINI TDTTIGTGDD CISIGDGTKQ LHVTNVTCGP GHGISIGSLG 480 KYENEEPVSG IFIKNCTITN TDNGVRIKTW PASPANGVVS DVHFEDIIMD NVKNPVIIDQ 540 EYCPYNQCTL QVPSKVKISN VSFKNIKGSS STPVGIKLVC SGGLPCENVE LSNIDLTYTG 600 KEGSITSECK HIKPTINNVA QPLACATSS |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-62 | 259 | 596 | 344 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-67 | 263 | 601 | 350 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-73 | 247 | 625 | 379 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-99 | 284 | 613 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-106 | 240 | 626 | 389 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABR26683.1 | 0 | 243 | 629 | 20 | 405 | polygalacturonase [Fragaria chiloensis] |
DDBJ | BAA89476.1 | 0 | 248 | 625 | 21 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 248 | 625 | 21 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 248 | 625 | 21 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 250 | 625 | 23 | 393 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-18 | 426 | 612 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-18 | 426 | 612 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-18 | 426 | 612 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-18 | 426 | 612 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-18 | 426 | 612 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO513613 | 211 | 341 | 551 | 0 |
CN496790 | 200 | 410 | 609 | 0 |
CN491697 | 151 | 459 | 609 | 0 |
CU617067 | 302 | 242 | 541 | 0 |
GO505337 | 182 | 247 | 428 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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