y
Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000261960 |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 42694.7 Isoelectric Point: 8.7439 |
Chromosome | Chromosome/Scaffold: 018046125 Start: 20828 End: 22789 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 52 | 386 | 0 |
TDACASTLASKIVVPRGTYKFVGATFKGPCKAPIEIQLQGTLQAPADGSKLPKADTWVGFERIDGLTLSGGGTFDGQGATAWKQNDCNKNKNCKSIAINL RFNFVTNSIIRDITTKDSKNFHVNVLGCNNVVFQHFTVSAPKESMNTDGIHIGRSTGINITDSTIGTGDDCISIGDGTKQLHVTKVTCGPGHGISIGSLG RYQNEEPVSGIFIKNCTIKNTDNGVRIKTWPASPSNGVVSDVHFEDIIMDNVGNPVIIDQEYCPWNQCTLKVPSKVKISNVSFKNIKGSSSTPVGIKIVC SGGLPCENVQLSDIDLTYSGNKGPITSQCKHVKPT |
Full Sequence |
---|
Protein Sequence Length: 400 Download |
MDLKLKSILP MFVFMLLVST SNAKSSIYDV TSAKYGGKAN SDISQAFSKA WTDACASTLA 60 SKIVVPRGTY KFVGATFKGP CKAPIEIQLQ GTLQAPADGS KLPKADTWVG FERIDGLTLS 120 GGGTFDGQGA TAWKQNDCNK NKNCKSIAIN LRFNFVTNSI IRDITTKDSK NFHVNVLGCN 180 NVVFQHFTVS APKESMNTDG IHIGRSTGIN ITDSTIGTGD DCISIGDGTK QLHVTKVTCG 240 PGHGISIGSL GRYQNEEPVS GIFIKNCTIK NTDNGVRIKT WPASPSNGVV SDVHFEDIIM 300 DNVGNPVIID QEYCPWNQCT LKVPSKVKIS NVSFKNIKGS SSTPVGIKIV CSGGLPCENV 360 QLSDIDLTYS GNKGPITSQC KHVKPTINNV ARALACATSS 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-73 | 30 | 380 | 366 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-79 | 35 | 367 | 343 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-87 | 11 | 380 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-116 | 55 | 384 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-125 | 1 | 384 | 393 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 19 | 396 | 21 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 396 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 27 | 396 | 30 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 396 | 3 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-18 | 93 | 383 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-18 | 93 | 383 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-18 | 93 | 383 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-18 | 93 | 383 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-18 | 93 | 383 | 36 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |