| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000263137 |
| Family | GH28 |
| Protein Properties | Length: 400 Molecular Weight: 44180.2 Isoelectric Point: 8.8135 |
| Chromosome | Chromosome/Scaffold: 006057416 Start: 9608 End: 11414 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 57 | 388 | 0 |
| KEACQWKGTARVLVPRGTFKLYPVIFSGPCNGPIAFLIKGTLRATTNPSTFSAHSWINFRYIDQLTVTGGGTLDGQGASAWHLNNCKTNPQCQALPVSMS FDFITNARIEYIRSYDSKNAHFKIFGCYNMDFRKIKISAPADSPNTDGIKIGSSYRIRIARSTIATGDDCVAMLHGSRKIHISKVVCGPGHGISIGSLGG NDKEDDVVGVIVKNCTFMGTDNGVRIKTWASPYSSKASNFTFQDIFLDDVLNPITIDQEYCPNPPCNQQTSSNVQIRDVTYKNIWGSSSSEVAVSLRCSK TWPCKNVLLDSIKMSYSNPRGRLRSFCNYAKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 400 Download |
| MDMGSIIYSV GRVFLLFFLL VWETEGRDQA KYFDVRKYGA VDDGKTDNSQ AFLDAWKEAC 60 QWKGTARVLV PRGTFKLYPV IFSGPCNGPI AFLIKGTLRA TTNPSTFSAH SWINFRYIDQ 120 LTVTGGGTLD GQGASAWHLN NCKTNPQCQA LPVSMSFDFI TNARIEYIRS YDSKNAHFKI 180 FGCYNMDFRK IKISAPADSP NTDGIKIGSS YRIRIARSTI ATGDDCVAML HGSRKIHISK 240 VVCGPGHGIS IGSLGGNDKE DDVVGVIVKN CTFMGTDNGV RIKTWASPYS SKASNFTFQD 300 IFLDDVLNPI TIDQEYCPNP PCNQQTSSNV QIRDVTYKNI WGSSSSEVAV SLRCSKTWPC 360 KNVLLDSIKM SYSNPRGRLR SFCNYAKGSS YGSQSPPSCL |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-89 | 35 | 370 | 342 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-89 | 33 | 400 | 370 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-96 | 60 | 399 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-97 | 31 | 400 | 377 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-125 | 33 | 399 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 31 | 400 | 33 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 31 | 400 | 33 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273801.1 | 0 | 12 | 400 | 9 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300425.1 | 0 | 31 | 399 | 1 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314146.1 | 0 | 12 | 400 | 5 | 392 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-16 | 80 | 363 | 51 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000007 | 120 | 343 | 73 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000007 | 120 | 343 | 73 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000007 | 120 | 343 | 73 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.00000000000001 | 121 | 343 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
