| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000263272 |
| Family | GH28 |
| Protein Properties | Length: 419 Molecular Weight: 45356.9 Isoelectric Point: 6.9514 |
| Chromosome | Chromosome/Scaffold: 021353148 Start: 15454 End: 19010 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 401 | 0 |
| TVACQNNGGGVVLFPPGVYLLSPLVLNGKCKGPIGVQIEGTLLARVEKEYSVDIDHWITFKYVDNFVINGGGSLNGQGPSAWPYNDCKKNPHCKRLPGSL RLDYVTNARINHITSINSKNFHIGLFASHDITISSINISAPANSPNTDGIHLGLSQNIQILDAAIATGDDCISFSTGTNNVNISGVQCGPGHGISIGSLG KIVGDNVSFVDIRNCTFLGTQNGVRIKTWAPSEPGIVSHITFEQIQVDQVENPVIIDQQYCPSRICDPXVYSRVQIEEVQFSNIWGTSITQNVVNLKCSK TTPCQKIGLDDINLTYSGREGPAQSTCSNADVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 419 Download |
| MAEKENMVKV XXXRHXEWWL ASRPVNVAXF LLVSLPRVLA QQTFFDVTKY GGVGDGITDN 60 VKAFTDAWTV ACQNNGGGVV LFPPGVYLLS PLVLNGKCKG PIGVQIEGTL LARVEKEYSV 120 DIDHWITFKY VDNFVINGGG SLNGQGPSAW PYNDCKKNPH CKRLPGSLRL DYVTNARINH 180 ITSINSKNFH IGLFASHDIT ISSINISAPA NSPNTDGIHL GLSQNIQILD AAIATGDDCI 240 SFSTGTNNVN ISGVQCGPGH GISIGSLGKI VGDNVSFVDI RNCTFLGTQN GVRIKTWAPS 300 EPGIVSHITF EQIQVDQVEN PVIIDQQYCP SRICDPXVYS RVQIEEVQFS NIWGTSITQN 360 VVNLKCSKTT PCQKIGLDDI NLTYSGREGP AQSTCSNADV RISGRQNPPA CTGKDKALG 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-73 | 32 | 411 | 395 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-75 | 39 | 408 | 379 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 3.0e-77 | 25 | 397 | 381 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-84 | 72 | 403 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-109 | 43 | 412 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 45 | 411 | 35 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 45 | 411 | 35 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273801.1 | 0 | 31 | 411 | 16 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002276688.1 | 0 | 30 | 411 | 16 | 404 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002314146.1 | 0 | 45 | 411 | 27 | 391 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-17 | 123 | 383 | 100 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.0000000000003 | 139 | 397 | 81 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.0000000000003 | 139 | 397 | 81 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.0000000000003 | 139 | 397 | 81 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.0000000000004 | 90 | 328 | 19 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT741125 | 263 | 153 | 412 | 0 |
| EY196848 | 274 | 137 | 409 | 0 |
| EX164190 | 274 | 137 | 409 | 0 |
| GR462194 | 275 | 123 | 395 | 0 |
| CO101156 | 288 | 48 | 330 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
