| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000264703 |
| Family | GH28 |
| Protein Properties | Length: 857 Molecular Weight: 91958.8 Isoelectric Point: 4.9895 |
| Chromosome | Chromosome/Scaffold: 002036247 Start: 10257 End: 14767 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 143 | 358 | 0 |
| CPQAHIGINSCDNADVSHLNIHAPEDSPNTDGIDISFSSHVTIRDSSIGTGDDCISIGDRCSFLSITNIACGPGHGISVGSLGEDGASGKVDNIYVKDCS FTGTTNGARIKTWQGGSGYARNITFERIKLDRAQYPIIIDQYYCNGEHDCKSQSSAVVVADVMYIDFEGTSATEEAIKLDCDQVSGGCHNIVMDRINIMP AVRDMKIFATCKNAKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 857 Download |
| MSIINTLIHI LIFFFLPLPL FIXIAHSQKI LDITKYGAVG DGQTDDSPAF VNAWKXLCQG 60 INEAINGIPT LNVPEGKTFL LQRLKFEGPC NTKNVHLQVL GNLLAPARGA WKECDSEDWL 120 SFSNVENLML DGSGKIDGQG AACPQAHIGI NSCDNADVSH LNIHAPEDSP NTDGIDISFS 180 SHVTIRDSSI GTGDDCISIG DRCSFLSITN IACGPGHGIS VGSLGEDGAS GKVDNIYVKD 240 CSFTGTTNGA RIKTWQGGSG YARNITFERI KLDRAQYPII IDQYYCNGEH DCKSQSSAVV 300 VADVMYIDFE GTSATEEAIK LDCDQVSGGC HNIVMDRINI MPAVRDMKIF ATCKNAKGTY 360 VGTTVPNVPC LQSSATEPTR PTTIYTGSGG SGSANLHINY YLFCPLMTLI GGFGIQRETI 420 PNAMRFNIXV RILVFFFLTX SLFIGIAXSQ KIFDITKYGA VGDGRTDDSP AFLKSWGDIC 480 NGENDXVLTL LVXEGKTFML QPIKFEGNXL APNRGAWKEC ESGSWLSFSN IENLMVDGXE 540 QATIVLQSTA GAPFSILPTF ACGPGHGISV GSLGADGATE KVDNIYVKDC SFTXTINGAR 600 IKTWQGGSGT AKVSRRXGGM RRTSISKGHQ PQKVIXFDCD KISGGCXNIV MDQIDIKYSV 660 GDKMIFASCN NXEGXSIGTT VPNVLCLKSS GTKHAXPTEP VTPATADPKI LPPPSPINPP 720 PLPIMPPPLQ PXPTVPLPSP XPPVPTPVPI VPPPXPPAKP IKPLPSPPIV PIXPLLPPPP 780 KPVIPPPLEP ITPPPPEDII PLPPDAISPL PSPPEPPTPP TPVPHAEGQL DXMEAPREGD 840 ESDIYNFNNN YFSYYFV |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-16 | 414 | 538 | 139 | + polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-17 | 562 | 692 | 164 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-18 | 436 | 538 | 117 | + Probable polygalacturonase At3g15720 | ||
| PLN03003 | PLN03003 | 2.0e-93 | 27 | 374 | 381 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 9.0e-99 | 29 | 358 | 353 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002324855.1 | 0 | 11 | 375 | 4 | 398 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002324855.1 | 2e-17 | 550 | 691 | 227 | 398 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 7 | 374 | 5 | 395 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515526.1 | 0.0000000000005 | 428 | 541 | 4 | 128 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515526.1 | 8e-16 | 562 | 690 | 236 | 395 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 0.00000000000005 | 171 | 316 | 165 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 0.0000000000004 | 143 | 301 | 172 | 342 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000004 | 160 | 288 | 134 | 268 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
